Pairwise Alignments

Query, 160 a.a., chemotaxis protein CheW from Pseudomonas simiae WCS417

Subject, 520 a.a., chemotaxis protein CheW from Vibrio cholerae E7946 ATCC 55056

 Score =  100 bits (249), Expect = 4e-26
 Identities = 54/148 (36%), Positives = 96/148 (64%), Gaps = 2/148 (1%)

Query: 11  DDPILQWVTFKLDNETYGINVMRVQEVLRYTE-IAPVPGAPSYVLGIINLRGNVVTVIDT 69
           D+  +Q V FKLD E +GI++  VQE++R  E I+ VP    ++ G+INLRGNV+ ++D 
Sbjct: 365 DNTDMQLVIFKLDKEEFGISIHTVQEIIRIPENISRVPKTDDFIEGVINLRGNVLPIVDM 424

Query: 70  RQRFGLGTVEVSDNTRIVIIEADKQVVGIMVDSVAEVVYLRQSEVETAPNVGNEESAKFI 129
           R+RF L  +   +  RI+++  +K   G +VDSV+EV+ + +S++E AP V +EE A+ +
Sbjct: 425 RKRFHLPEMARHERQRILVVNFEKISTGFIVDSVSEVLRIPESQLEDAP-VLSEEQAQLM 483

Query: 130 QGVCNKNNELLILVELDKMMSEEEWSEL 157
           + + N +  ++ ++  D+++S  E  +L
Sbjct: 484 RQMVNLSPRMIGVLSADQLISNTEMYKL 511



 Score = 72.4 bits (176), Expect = 1e-17
 Identities = 35/148 (23%), Positives = 73/148 (49%)

Query: 11  DDPILQWVTFKLDNETYGINVMRVQEVLRYTEIAPVPGAPSYVLGIINLRGNVVTVIDTR 70
           ++ + Q+V F L +E + +++  V+E++R      VP  PSY++G+ NLRG ++ V+  R
Sbjct: 14  EENLTQYVNFMLGDELFALHMQEVEEIIRLPTTFSVPLTPSYLIGLSNLRGQILPVLCLR 73

Query: 71  QRFGLGTVEVSDNTRIVIIEADKQVVGIMVDSVAEVVYLRQSEVETAPNVGNEESAKFIQ 130
               +     ++ TR+++I   K  +G  VD V  V       ++     G +     I 
Sbjct: 74  TLLCMDRTSATEATRVIVITIGKTKIGFTVDRVVNVATPDPEMIKPTNTAGGKIDPTLIT 133

Query: 131 GVCNKNNELLILVELDKMMSEEEWSELE 158
              + +N+++ ++   +++      ELE
Sbjct: 134 NTIHSDNQIIQVLNCHRLLDNSVEEELE 161



 Score = 72.0 bits (175), Expect = 1e-17
 Identities = 41/131 (31%), Positives = 73/131 (55%), Gaps = 7/131 (5%)

Query: 11  DDPILQWVTFKLDNETYGINVMRVQEVLRYTEI-APVPGAPSYVLGIINLRGNVVTVIDT 69
           D+ + Q V   +D + Y   +   QE++R  EI   VP   S +LG+INLRG  + ++  
Sbjct: 187 DEDMRQLVCCMVDGQEYAFPLEDTQEIVRIPEIITKVPLTESAILGVINLRGKTLPLVSL 246

Query: 70  RQRFGLGTVEVSDNTRIVII-----EADKQVVGIMVDSVAEVVYLRQSEVETAPNVGNE- 123
           R  FGL ++  SD+ R++++     E ++  VG++VD+V EV+ L    +++ P + ++ 
Sbjct: 247 RTLFGLPSISFSDSHRVLVVNISLSEKERLPVGVVVDAVREVIRLHVDVMDSVPEIMSKM 306

Query: 124 ESAKFIQGVCN 134
             A  I  +CN
Sbjct: 307 GQANDISAICN 317