Pairwise Alignments

Query, 262 a.a., amino acid ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

Subject, 252 a.a., transporter, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 48.5 bits (114), Expect = 1e-10
 Identities = 63/233 (27%), Positives = 104/233 (44%), Gaps = 30/233 (12%)

Query: 26  AAQLVRIGAAH-FPPYTVRPEQ-GADTGLLPQLVEALNASQTDYQFVLVPTSIPRRFRDF 83
           AA+ + IGA   + PY    +Q G   GL P+LV+A+ A++   +    P    R   D 
Sbjct: 21  AAEPLVIGAEDDWAPYCALDKQSGQPLGLAPELVKAVFATEK-LEIAFRPLPFARCMHDA 79

Query: 84  EQGRV----DMAIFENP--DWGWQKIPHTTVDMGLEDAEIFVAQREAGRDQSYFADLKGK 137
           + G+V    +  I E     + W K P     M  ED  IF    E  RD    + L+GK
Sbjct: 80  KSGKVVGCFNATITEENRNQYYWHKTP-----MFEEDLAIFALASEPNRDLQ-LSSLEGK 133

Query: 138 RLAVFSGYHYAFANFNPDPKYMAEHFNATLTYSHDSNLL-MVARGRADIALVT--RSYLS 194
           R+ +  GY Y   +F  + K     F A      D+ +L M+ RGR D  L+     YL 
Sbjct: 134 RVGITLGYTYP-TDFMDNTK--ITRFEA----KSDAQILEMLVRGRVDYILMNGMPGYL- 185

Query: 195 DFMVRNAEMAGQFLVSERI--DQVYHHFALLRPKAPITGEAFSALLKRLRDDG 245
              ++  ++ G+ +   +I  D  +  F+   P+     + F   L++++++G
Sbjct: 186 --QIQQRQLTGKVIKVGKISTDGFWLAFSRTHPQGEAMSKQFEEGLQKIKNNG 236