Pairwise Alignments

Query, 211 a.a., pseudouridine synthase from Pseudomonas simiae WCS417

Subject, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

 Score =  119 bits (298), Expect = 6e-32
 Identities = 76/221 (34%), Positives = 109/221 (49%), Gaps = 18/221 (8%)

Query: 6   IHILYQDDAVLVVNKPTLLLSVPGRADDNKDCLITRLQENG----YPEARIVHRLDWETS 61
           ++I+Y+DD ++V+NKP   +  PG    +K  L   L         P A IVHRLD +T+
Sbjct: 84  LNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLNALLFHYSPIAEVPRAGIVHRLDKDTT 143

Query: 62  GIILLARDADTHRELSRQFHDRETEKAYTALAWGQPELDSGSIDLPLRYDPPTKPRHVVD 121
           G++++A+       L R    R+  + Y A+  G      G ID P+     TK   +  
Sbjct: 144 GLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIGTMTA-GGMIDKPIGRHS-TKRTLMSV 201

Query: 122 HEFGKHALTFWKVLERCGDWCRVELTPITGRSHQLRVHMLSIGHPLLGDGLYAHE----- 176
              GKHA+T ++V E   +  R+ L   TGR+HQ+RVHM  + HPLLGD  Y        
Sbjct: 202 SPMGKHAVTHYRVAEHFREHTRLRLRLETGRTHQIRVHMAYLQHPLLGDTAYGGRARIPK 261

Query: 177 -------QALAAWPRLCLHASMLSFTHPQSGERLRFECPAP 210
                  + +  + R  LHA ML F HP +GE L F  P P
Sbjct: 262 GATEELTEMIRDFDRQALHAVMLKFEHPVTGEELEFHAPVP 302