Pairwise Alignments

Query, 739 a.a., primosomal protein N' from Pseudomonas simiae WCS417

Subject, 1171 a.a., transcription-repair coupling factor from Sinorhizobium meliloti 1021

 Score = 66.6 bits (161), Expect = 7e-15
 Identities = 67/236 (28%), Positives = 102/236 (43%), Gaps = 28/236 (11%)

Query: 154 GVAHQLLSKLMLSKDSLDLLLAKGLVQVEIRKH--------APDARHEHWLAQPELPLNP 205
           GVA Q   K  L K  LD+  A GL+++   +H        A D  ++ + A+       
Sbjct: 572 GVAWQA-RKAKLKKRLLDM--AGGLIRIAAERHTRHAPVLAAQDGVYDEFAARFPYDETE 628

Query: 206 EQRAAYEAIRAGFDSFHAF--LLAGVTGSGKTEVYLQLIRETLQAGKQALVLIPEINLGP 263
           +Q  + +A+R           L+ G  G GKTEV L+        G Q  V++P   L  
Sbjct: 629 DQLNSIDAVRDDLGRGRPMDRLVCGDVGFGKTEVALRAAFIAAMNGVQVAVVVPTTLLAR 688

Query: 264 QTLARFEQRFNA---RIALVHSAVNDRERLESWLAARDGEADIIIGTRSALFTPMK--NP 318
           Q    F  RF     RI      V  ++   +     +G+ DI++GT + L + +K  N 
Sbjct: 689 QHFKTFSDRFRGLPIRIQQASRLVGSKDLALTKKEVAEGKTDIVVGTHALLGSSIKFANL 748

Query: 319 GLIIIDEEHDGSYKQQEGLRYHARDLALVRARQEDIPIVLGSATPSLESLHNAYTG 374
           GL+IIDEE     K +E L          +  + D+ ++  SATP   +L  A TG
Sbjct: 749 GLLIIDEEQHFGVKHKERL----------KELKTDVHVLTLSATPIPRTLQLALTG 794



 Score = 26.6 bits (57), Expect = 0.008
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 14/59 (23%)

Query: 499 EERLGILFPDYPVLRV--------DRDSTS------RKDAMNQLFATIQKGHPCILIGT 543
           E+ LG + PD PVL +        DR S S      R  A++ L A  +K HP I++ T
Sbjct: 57  EQVLGFVAPDIPVLTLPGWDCLPYDRVSPSADTSARRLAALSALIAHRRKPHPAIVLVT 115