Pairwise Alignments

Query, 600 a.a., ABC transporter ATP-binding protein from Pseudomonas simiae WCS417

Subject, 599 a.a., lipid A export ATP-binding/permease protein MsbA from Phaeobacter inhibens DSM 17395

 Score =  231 bits (590), Expect = 5e-65
 Identities = 179/575 (31%), Positives = 283/575 (49%), Gaps = 41/575 (7%)

Query: 33  VAVLATLCSVPIPLLLPLLVDEVLLGHGDAALNVMNHALPLGWQKAAGYIGLMLLVTLFL 92
           +A LA + +  + L LPL V  V+     +   ++N            Y    L++   L
Sbjct: 39  MATLALVLTAGLSLTLPLAVRRVVDNFRISEAALLNQ-----------YFAAALVIAALL 87

Query: 93  RCGALVFNVVQARLFARLAKDIVYRIRVRLIERLKRISLGEYESLGSGTVTTHLVTDLDT 152
             G      ++  L  RL + +V  IR  + +R+  +S   +E + +G V + + TD   
Sbjct: 88  AVGT----GLRYALVTRLGERVVADIRKAVFDRVIGMSPAFFEQIMTGEVLSRITTDTTL 143

Query: 153 LDKFVGETLSRFLVAMLTLVGTSAILVWMHWQLALLILLFNPLVIYATVQLGKRVKHLKK 212
           +   +G ++S  L  ML  +G   +++    +L  L+LL  P VI   + LG+R++ + +
Sbjct: 144 IQSVLGSSVSIALRNMLIFIGGLVLMLLTSAKLTSLVLLIVPAVIVPILVLGRRLRKISR 203

Query: 213 LENDSTSRFTQALTETLDAIQEVRA-----GNRQGFFLGRLGQRAREVRDYAIHSQWKTD 267
              D  +  +    E L A+Q V+A      +R  F   RL + A +V    I  Q +  
Sbjct: 204 ENQDWIAASSGNAGEALGAVQTVQAYTHEVASRSEF--SRLTETAFDVSMRRI--QTRAF 259

Query: 268 ASSRASGLLFQFGIDIFRAAAMLTVLFSDLSIGQMLAVFSYLWFMIGPVEQLLNLQYAYY 327
            +     L+F   + +    A   V    +S G ++    Y   + G V  L  +     
Sbjct: 260 LTVIVIFLVFSGVVGVLWMGAN-DVRAGIMSEGTLVQFVIYAVLVAGSVAALSEIWSELQ 318

Query: 328 AAGGALTRINELLARADEPQYAGGEDPFVGRETVGIEVRG------LNFGYG---EDLVL 378
            A GA  R+ ELL   D+ Q     DP+  R  +   VRG      ++F Y    +   L
Sbjct: 319 RAAGATERLVELLTAVDQVQ-----DPYAPR-ALAAPVRGEIRFDDVSFRYPARPQIPAL 372

Query: 379 DQLNLAIAPGEKVAIVGASGGGKSTLVQLLLGLYTPQAGTIRFGGATQQEIGLETIRENV 438
             ++L + PGE VA VG SG GK+T++Q++   Y P +G +   G   +++  +  R+++
Sbjct: 373 VDVSLTVQPGETVAFVGPSGAGKTTIIQMIQRFYDPTSGAVCLDGRPLRDLQRDDFRQHI 432

Query: 439 AVVLQHPALFNDTVRANLTMGRE-RSDQACWQALEIAQLDATVKSLPLGLDSVVGRSGVR 497
           A+V Q P +F  + R N+  GR   SD     A   A     + +LP G DS VG  GV 
Sbjct: 433 ALVPQDPVIFALSARDNIRFGRPGASDAEVEAAARAAAAHDFISALPEGYDSQVGERGVM 492

Query: 498 FSGGQRQRLAIARMVLAEPKVVILDEATSALDAATEYNLHQALARFLSGRTTLIIAHRLS 557
            SGGQ+QR+AIAR +L +  V++LDEATSALDA +E  +  A+     GRTTLI+AHRL+
Sbjct: 493 LSGGQKQRIAIARAILRDAPVLLLDEATSALDAESERLVQAAVDELSQGRTTLIVAHRLA 552

Query: 558 AVKQADRVLVFDGGHIAEDGDHQQLIADGGLYAKL 592
            VK+ADR++V + G I   G H QL+A+ GLYA+L
Sbjct: 553 TVKKADRIVVMEEGRIIATGTHDQLVAEDGLYARL 587