Pairwise Alignments

Query, 820 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 816 a.a., response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) from Shewanella loihica PV-4

 Score =  252 bits (644), Expect = 5e-71
 Identities = 189/590 (32%), Positives = 290/590 (49%), Gaps = 22/590 (3%)

Query: 220 VLALLRTHKLLTQRHAFADALQQEKERAQITLESIGDGVITTDVDGAITYMNPAAEALTH 279
           V  +L T   +T        L  E  R +I L +IGD VI TD +  IT+MNP AE LT 
Sbjct: 238 VAGMLLTLTDITSIKRAKSQLDTENRRLKIMLNAIGDAVIATDSEAMITFMNPIAERLTG 297

Query: 280 WNSAQAQGLPLAALFNLLDDNAQPDGFTLIEHIVKGQLSGGSEHSKTIQRLDGSTVSVTL 339
           W    A GL +  + +L D   +      +   +K + +     +  +  LDG+T  +  
Sbjct: 298 WVCRDAIGLHIEQVMDLCDAKTKYRSPNPVTIAIKEKRNVAMALNCQLNSLDGTTFQIED 357

Query: 340 VGAPIR-STGKVTGAVLVLHDMTQERQYIANLSWQATHDALTGLANRREFEFRLEQVLHP 398
             API  S GKVTG ++V HD ++       +S  A HD LT L NR     R+      
Sbjct: 358 SAAPITDSEGKVTGGIIVFHDCSESVAMSLKMSHLANHDQLTDLPNRILLHDRINHAC-A 416

Query: 399 TAQQNGGRHALMFLDLDQFKLVNDTCGHAAGDELLRHICALLQSDLREGDTLARLGGDEF 458
            A       ALM +D+D FK +ND+ GH+ GD++++ +   LQS +    TL R+GGDEF
Sbjct: 417 VADSYDKSVALMLIDIDHFKYLNDSLGHSYGDQVIKQVAKRLQSLIDPNATLGRIGGDEF 476

Query: 459 GILLENCPA-----AVAEKIAESLRHTVQNLHFVWKGRPFMTTVSIGLVHLGHTPTTLET 513
            +LL +  A     ++A  I  SL     N  F   G+ +  +VS+G+          E 
Sbjct: 477 VLLLPSLTATSQVDSIATDIVRSL-----NTPFRIDGQEYTLSVSVGISIYPSDALRAEE 531

Query: 514 SLRAADMACYMAKEKGRNRVQVYHAD-DSELSLRFGEMAWVQRLHMALEENRFCLYAQEI 572
            +   D A Y AK+ GRNR   +  D + EL+ R      V  L  A++     +Y Q  
Sbjct: 532 LMTHVDAAMYRAKDLGRNRFCYFSEDLEQELTKRH---ELVTLLRTAIDTEAIEVYYQPK 588

Query: 573 SPLGQTNGGDGHIEILLRLHDEAGRIILPDSFIPAAERYGLMTSLDRWVVENVFKIINRC 632
             L +T    G  E L RL+D +G++I P  FIP AE  GL+  L   +++    +  + 
Sbjct: 589 VDL-KTKEIIG-AEALARLYDPSGKLISPLDFIPLAEETGLIHQLGEIILKQSC-MAAKA 645

Query: 633 MQERPGLPMAMCAINLSGITIGDDDFLGFLREKFHTYTIPPGMICFEITETSAIANLGSA 692
            Q+R G P+ + A+N++     + +F   + +      +    +  E+TE+S + +   A
Sbjct: 646 WQKR-GRPLQI-AVNIAAKQFTNPEFCDSVAKVLELTGLDSSFLELEVTESSLMYDFDEA 703

Query: 693 IRFINELKALGCHFSLDDFCAGMSSFAYLKHLPVDFLKIDGSFVKDMLDDPINRAMVEVI 752
           +  +N L +LG   ++DDF  G SS +YLK  PV+ LKID SFVKDML D  +  +V+ +
Sbjct: 704 LNVLNTLSSLGLSIAIDDFGTGYSSLSYLKFFPVNTLKIDQSFVKDMLGDEQSLDIVKAV 763

Query: 753 NHIGHVMGKRTIAEFVETPQIEQALLEIGVDYAQGYLIERP-QLFTFDSL 801
            H+   +  + IAE +E  +  Q L+ +  +  QGY+  +P  L  FD L
Sbjct: 764 IHLAKSLKLKLIAEGIEDAEQLQKLVALECEQGQGYMFSKPLPLKEFDQL 813