Pairwise Alignments

Query, 820 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 1491 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  210 bits (535), Expect = 4e-58
 Identities = 173/563 (30%), Positives = 259/563 (46%), Gaps = 30/563 (5%)

Query: 240  LQQEKERAQITLESIGDGVITTDVDGAITYMNPAAEALTHWNSAQAQGLPLAALFNLLDD 299
            L+ E        E+  +GV+  DVD  I   N AA+ +         GL  +    + D 
Sbjct: 929  LEDEVSLLAQAFENTSEGVLILDVDENIRVANHAAQHIIGSEQKSLVGLSFSQFVQMKDG 988

Query: 300  NAQPDGFTLIEHIVKGQLSGGSEHSKTIQRLDGSTVSVTLVGAPIRSTGK-VTGAVLVLH 358
             +     T +  ++  + S   E     Q  +G    V L  + ++S  +     V+V  
Sbjct: 989  LS-----TEVAQLLGQETSWTGERELVGQ--NGLVCPVWLNVSVMQSVNQNAIHYVVVFS 1041

Query: 359  DMTQERQYIANLSWQATHDALTGLANRREFEFRLEQVLHPTAQQNGGRHALMFLDLDQFK 418
            D+T+ ++  A+L   A +D LTGL NR  F  RL Q +   A+QNG + AL+FLDLD+FK
Sbjct: 1042 DITERKRTEADLRRLANYDVLTGLPNRSLFSNRLMQSIQ-AAEQNGEKLALLFLDLDRFK 1100

Query: 419  LVNDTCGHAAGDELLRHICALLQSDLREGDTLARLGGDEFGILLENCPAAVAEKIAESLR 478
             VND+ GH+ GD LL      LQS +     L R GGDEF ILL+N       K    + 
Sbjct: 1101 HVNDSYGHSMGDALLVEASNRLQSCIGSEHLLCRFGGDEFVILLKNV------KELSDIN 1154

Query: 479  HTVQNL------HFVWKGRPFMTTVSIGLVHLGHTPTTLETSLRAADMACYMAKEKGRNR 532
            H  + L       F   GR F  + SIG+          E  ++ AD+A Y AKE+GR  
Sbjct: 1155 HLAEQLLAQIVAPFRLFGREFYISTSIGISIWPDDAMQPEAFIKNADLAMYHAKEEGRGN 1214

Query: 533  VQVYHADDSELSLRFGEMAWVQRLHMALEENRFCLYAQEISPLGQTNGGDGHI--EILLR 590
             + Y ++ +  +L    +     L  A+E   F LY Q   P      GD  I  E L+R
Sbjct: 1215 FKYYSSERNAQALY--HLRLEADLRKAIERQEFELYYQ---PQIDILRGDKFIGMEALIR 1269

Query: 591  LHDEAGRIILPDSFIPAAERYGLMTSLDRWVVENVFKIINRCMQERPGLPMAMCAINLSG 650
                    + PD FI  AE  GL+  +DRWV+      ++     +  +     ++N+S 
Sbjct: 1270 WQHPVDGFVRPDIFIKVAEACGLVVDIDRWVLRCA--CLDGARWAKQTIEPFKMSVNISA 1327

Query: 651  ITIGDDDFLGFLREKFHTYTIPPGMICFEITETSAIANLGSAIRFINELKALGCHFSLDD 710
            +     DF+  +++      +P   +C EITE   +  L  A   + +L  LG   ++DD
Sbjct: 1328 VHFRQPDFIDGVKKILDATHMPASSLCLEITEGVLMKELQVAKTHLKQLDDLGIEVAIDD 1387

Query: 711  FCAGMSSFAYLKHLPVDFLKIDGSFVKDMLDDPINRAMVEVINHIGHVMGKRTIAEFVET 770
            F  G SS AYL++  VD LKID SF+ D+  +  ++A+V  I  +   +    IAE VET
Sbjct: 1388 FGTGYSSLAYLRNFEVDTLKIDRSFLIDIASNGADQAIVSSIIELARNLKLTVIAEGVET 1447

Query: 771  PQIEQALLEIGVDYAQGYLIERP 793
             +  + L   G    QGY   +P
Sbjct: 1448 VEQLEQLFSRGCYIVQGYYFAKP 1470