Pairwise Alignments

Query, 298 a.a., LysR family transcriptional regulator from Pseudomonas simiae WCS417

Subject, 303 a.a., DNA-binding transcriptional activator GcvA (RefSeq) from Shewanella amazonensis SB2B

 Score =  149 bits (376), Expect = 8e-41
 Identities = 94/260 (36%), Positives = 135/260 (51%), Gaps = 3/260 (1%)

Query: 1   MSRDLPPLNALRAFEATARLNSVSQAAEQLHVTHGAVSRQLKVLEEHLGISLFVKDGRGL 60
           MSR LPPLNA++AFEA AR  S ++AAE+L VT  AVS Q+K LE+ LG+ LF +  R L
Sbjct: 1   MSRRLPPLNAVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEDFLGLKLFRRKNRSL 60

Query: 61  KLTDAGVRLRDASAEAFERLRDVCAELTQASADAPFVLGCSGSLLARWLIPRLGRLNADL 120
            LT+ G        + F +L D    L   SA     +  S S   +WL+PRL + +   
Sbjct: 61  LLTEEGQSYFLDIKDIFTQLSDATDRLLARSAIGSLTVSMSPSFAIQWLVPRLAKFSEKN 120

Query: 121 PDLRLHLSAGDGDLDPRRPGLDALLVFAEPPWPADMQVYELASERIGPVMSPRFAGYAHL 180
           PD+ + + A D +       +D  + + +  WP  ++  +L +E + PV SP        
Sbjct: 121 PDIDVRIKAVDSEEGSLTDDVDVAIYYGQGSWPG-LRADKLRNEVLIPVCSPMLLNGHKP 179

Query: 181 RDAPAEALCGEKLLHTTSRPQAWPSWAAQHGIEPGALKHGQGFEHLYYLLEAAVAGLGVA 240
            + PA+ L    LLH  SR   W +W  Q G+    +  G  F H   +L+AA  G GVA
Sbjct: 180 LETPAD-LKHHTLLHDMSR-HDWQAWFRQCGVTDVNVNQGPIFSHSSLVLQAAAHGQGVA 237

Query: 241 IAPQPLVAEDVRAGRLVAPW 260
           +    L   D++AGRLV P+
Sbjct: 238 LGYSVLARPDIKAGRLVVPF 257