Pairwise Alignments

Query, 298 a.a., LysR family transcriptional regulator from Pseudomonas simiae WCS417

Subject, 303 a.a., DNA-binding transcriptional activator GcvA (RefSeq) from Shewanella sp. ANA-3

 Score =  145 bits (366), Expect = 1e-39
 Identities = 95/260 (36%), Positives = 132/260 (50%), Gaps = 3/260 (1%)

Query: 1   MSRDLPPLNALRAFEATARLNSVSQAAEQLHVTHGAVSRQLKVLEEHLGISLFVKDGRGL 60
           MSR LPPLNA++AFEA AR  S ++AAE+L VT  AVS Q+K LE+ LG+ LF +  R L
Sbjct: 1   MSRRLPPLNAVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEDFLGLKLFRRKNRSL 60

Query: 61  KLTDAGVRLRDASAEAFERLRDVCAELTQASADAPFVLGCSGSLLARWLIPRLGRLNADL 120
            LT+ G        + F +L D    L   SA     +  S S   +WL+PRL + +   
Sbjct: 61  LLTEEGQSYFLDIKDIFTQLADATDRLLARSAIGSLTVSMSPSFAIQWLVPRLSKFSEKN 120

Query: 121 PDLRLHLSAGDGDLDPRRPGLDALLVFAEPPWPADMQVYELASERIGPVMSPRFAGYAHL 180
           PD+ + + A D +       +D  + +    WP  ++  +L +E + PV SP        
Sbjct: 121 PDIDVRIKAVDTEASSLTDDVDVAIYYGLGNWPG-LRADKLRNEVLIPVCSPMLLNGPKP 179

Query: 181 RDAPAEALCGEKLLHTTSRPQAWPSWAAQHGIEPGALKHGQGFEHLYYLLEAAVAGLGVA 240
              P E L    LLH  SR   W +W  Q GI    +  G  F H   +L+AA  G GVA
Sbjct: 180 LSKP-EDLKYHTLLHDMSR-HDWQAWFRQCGIHDINVNQGPIFSHSSLVLQAAAHGQGVA 237

Query: 241 IAPQPLVAEDVRAGRLVAPW 260
           +    L   D++AGRLV P+
Sbjct: 238 LGYSVLARPDIKAGRLVCPF 257