Pairwise Alignments

Query, 276 a.a., flagellar motor switch protein FliY from Pseudomonas simiae WCS417

Subject, 243 a.a., arginine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score = 60.5 bits (145), Expect = 3e-14
 Identities = 68/257 (26%), Positives = 112/257 (43%), Gaps = 32/257 (12%)

Query: 15  LLGAAVAMTSLAASAFQQDGKIIAGSDVTFFPYEYMD-NNKPAGFDIEFMDGLGKVMGRK 73
           LL + + + S +A+A QQ+ K +   + T+ P+EYMD NN+  GFD++  + L K +  K
Sbjct: 5   LLASLIGLVSASAAA-QQEIKFVM--EATYAPFEYMDENNQIQGFDVDLANALCKQLEAK 61

Query: 74  VETLDTRFPNLITGLQAGRFDVTNSSMYITAERVKVIDMI-PYLKSGESILTLKDSSFQP 132
               +  F +LI  L+  R+D   S+M IT  R++ ++   PY  +  + ++L       
Sbjct: 62  CSFHNQAFDSLIPALKFKRYDAAISAMDITEARLEQVNFSNPYYDNSAAFVSLAGKVADQ 121

Query: 133 KTPEEFCGHKIG-SMGATSWLAQMNKLSTEYCVAKGLKPIQISEYSTDPQTTQALLAHAV 191
              +   G ++G   G+T     + +LS    V           YS+       +    +
Sbjct: 122 AALK---GKRVGVQNGSTHQSFLLEQLSDVVAV----------PYSSYQDAFIDMKNGRI 168

Query: 192 EAQITDAAVAR------GVIDKLGSRVVISSDTLIYPVLNGFG--VKKGNDTVKKALLDG 243
           ++   D AV          +  +G RV     T      NGFG  V K N  +   L   
Sbjct: 169 DSVFGDTAVVAEWFKGDNNLAYVGERV-----TNAQYFGNGFGIAVNKDNQALLDQLNAA 223

Query: 244 LEKYRATSEYAALLKKY 260
           LE  +   EYAA+  KY
Sbjct: 224 LEAVKENGEYAAIFNKY 240