Pairwise Alignments

Query, 685 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  188 bits (478), Expect = 5e-52
 Identities = 130/370 (35%), Positives = 202/370 (54%), Gaps = 21/370 (5%)

Query: 329 LQKFVPVAATFSLLALAALYLFMC-----LQASIRRSASGITTLAESLRDGNLC--VEVA 381
           L + +   + FS+ ++ AL  FM      L   I      + T A ++ +GNL   ++  
Sbjct: 181 LTELIDNISEFSVASIVALLAFMSAVTWLLTNLICSPLMQVVTQANAIAEGNLAHRLDRK 240

Query: 382 VEGRDELAAISTALNVAVVQLRTSLLGVNHETQQLGSAVLTLNAQSGNTLTEVEDQQQQI 441
             G DEL  ++ A +     LR  +  +     QL  AV  ++A S  T   ++ QQ+++
Sbjct: 241 TIGHDELGELADACSKMQNNLRLMVEEIITSATQLAHAVDEVSAVSEQTSQGMQIQQEEV 300

Query: 442 SQIATAATQLAATSLGVARSCEHASDSAQQTRRIAEDSSRDSQRTTASIQQLNVRLTDTA 501
            QIATA  ++ +T   VAR+ E ASD+++ + + A   S+  +    SIQ +N  +  T 
Sbjct: 301 MQIATAMAEMKSTVAEVARNTEVASDASRDSSQHANVGSQQMRAVNDSIQHVNQEIGRTE 360

Query: 502 DALEQVSQQGQQIQSVVDTIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLSQ 561
             + ++  Q QQI  VVD I  IAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSL+ 
Sbjct: 361 QRVLELESQAQQINMVVDVISNIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAG 420

Query: 562 RTQASTAQIAGTVDSLRA-------TVSQAVALMGAACEQALTDAQSVTGLGTRLGEIAG 614
           +TQ ST  I   + +L+A       T + +  L+    EQ+    Q++  +  +  +IA 
Sbjct: 421 KTQQSTGDIVEIIQNLQACAQKARETTNNSRELINHCVEQSQETQQAIEQIRHQSSQIA- 479

Query: 615 AVQHVTDTLAQIATAVEEQAATADEVSGNIQQVDQAAGRLLDGARAVNQAADTLSKGSQA 674
                 D   QIA+A  EQ + ++E+S NI++++++A ++  G+ +  Q+   LS+ +  
Sbjct: 480 ------DMTIQIASACGEQDSVSEELSRNIERINESAKQVAQGSSSAAQSCAELSQLASQ 533

Query: 675 LSDNTARFRL 684
           L D   RFRL
Sbjct: 534 LQDTVQRFRL 543