Pairwise Alignments

Query, 685 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 536 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  186 bits (473), Expect = 2e-51
 Identities = 114/358 (31%), Positives = 193/358 (53%), Gaps = 6/358 (1%)

Query: 330 QKFVPVAATFSLLALAALYLFMCLQASIRRSASGITTLAESLRDGNLCVEVAVEGRDELA 389
           Q+F+ +     ++ L  + L + +  ++ +    I  + + +  G+L  ++ V G+DEL 
Sbjct: 182 QQFLRMGFATLIVTLVMIGLGVVISRAVIQPLDTIKDVMKKVAQGDLTAQIPVLGKDELG 241

Query: 390 AISTALNVAVVQLRTSLLGVNHETQQLGSAVLTLNAQSGNTLTEVEDQQQQISQIATAAT 449
            ++  +N ++  +  +L+        +  A + + + +  T   V  Q+ Q+SQ+ATA  
Sbjct: 242 IVAQRINNSIAAVHDALVESVQSASSVAEAAIRIASSAEETSQAVVSQRDQLSQLATAMN 301

Query: 450 QLAATSLGVARSCEHASDSAQQTRRIAEDSS---RDSQRTTASIQQLNVRLTDTADALEQ 506
           Q+ AT   VA    HA D+A+ T   +++++   +D   +  SI+ L+V L    D + +
Sbjct: 302 QMTATVADVAG---HAEDTARDTLDASKEANLGDKDVHSSVDSIRALSVELGVATDQVNK 358

Query: 507 VSQQGQQIQSVVDTIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLSQRTQAS 566
           + +   QI  V   I GI+EQTNLLALNAAIEAARAG+QGRGFAVVADEVR+L+ RT  S
Sbjct: 359 LKEGVMQISEVTSVISGISEQTNLLALNAAIEAARAGDQGRGFAVVADEVRNLASRTHHS 418

Query: 567 TAQIAGTVDSLRATVSQAVALMGAACEQALTDAQSVTGLGTRLGEIAGAVQHVTDTLAQI 626
           T +I   ++ L+       + M  +   A     +    G+ L  I   +QHV+D   QI
Sbjct: 419 TDEIQTMINRLQQLAVSTASAMQKSQALAANSVATAENAGSDLSLIVNHIQHVSDKATQI 478

Query: 627 ATAVEEQAATADEVSGNIQQVDQAAGRLLDGARAVNQAADTLSKGSQALSDNTARFRL 684
           ATA EEQ+A A+E++ N+  ++ AA  +   A  + + ++ L+  S+ L      F+L
Sbjct: 479 ATAAEEQSAVAEEMNRNVSGINDAALEMSQAATYLAEESEKLADLSRQLDQKLTAFKL 536