Pairwise Alignments

Query, 336 a.a., ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

Subject, 343 a.a., Periplasmic binding protein (NCBI) from Rhodospirillum rubrum S1H

 Score =  327 bits (839), Expect = 2e-94
 Identities = 162/313 (51%), Positives = 216/313 (69%), Gaps = 7/313 (2%)

Query: 20  AAPTHYPLTVENCGSRLTFQQAPARSVTIGQAATEMLYALGVGDKVVGTSLWFNSVLPQY 79
           A PT YPLT++ CG  +TF +AP+R V+IGQ++TE+LY LG+ DKVVGT+LW   V+  Y
Sbjct: 28  AEPTRYPLTLQTCGQTITFDRAPSRVVSIGQSSTEILYLLGLADKVVGTALWVGPVIAGY 87

Query: 80  KVQNDSIERLANNEPSFEAVIAKRPQLVAAELEWVVGPQGVVGTREQFHELKIPTYLLPS 139
           +  +  + RLA+N+PSFE+V+ K+P LV  + +W VGP+GVV T  QF ELKIP Y  P+
Sbjct: 88  EAVDAKVPRLADNDPSFESVVGKKPDLVTNQYQWQVGPKGVVATNAQFAELKIPVYTSPA 147

Query: 140 DCEGKDNLVGADGTRLEPFRIETIYKSISQLAEIFDVQARGQQLNDDLKVRLA---KSVA 196
           DC GKDN  G DG R   F  + IY+ I  LA IFDV  RG+ L +DLK R A   K +A
Sbjct: 148 DCVGKDNSEGGDGLRTSRFTTDLIYQEIEDLARIFDVSERGEVLINDLKAREAAAKKKIA 207

Query: 197 TVQSKGLKQSSALVWFSSSEMASDPYVAGHKGIPEFMLETLGLHNVVQSDEEWPAVGWET 256
           +++S      SA+ WFSS+++  DPYVAG  G P ++L  LG+ NV++S+EEWP VGWET
Sbjct: 208 SLRS----PVSAVFWFSSADLDIDPYVAGSDGAPGYILSVLGITNVIKSEEEWPTVGWET 263

Query: 257 LAKANPTFLVIARMDRRRYPADDHEKKLAFLRSDPVTRNMDAVKNNRIIILDALALQASI 316
           +AKANPT +V   M RRR+P DD   K  FL +DPVTR M AV+  RI+ LDA A+  +I
Sbjct: 264 IAKANPTIIVAGEMTRRRFPVDDIAVKKTFLANDPVTRLMPAVQEGRIVPLDAQAMNPTI 323

Query: 317 RTFDGLEQLATAI 329
           RT +G+E +A A+
Sbjct: 324 RTIEGIEVVADAV 336