Pairwise Alignments

Query, 671 a.a., excinuclease ABC subunit B from Pseudomonas simiae WCS417

Subject, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

 Score = 63.9 bits (154), Expect = 4e-14
 Identities = 74/307 (24%), Positives = 120/307 (39%), Gaps = 39/307 (12%)

Query: 41  GSGKTFSIANVIAQINRPTLVLAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAY 100
           G+    +IA +       TL+  P+   A +L  E + F  +                A 
Sbjct: 26  GASLALAIAELANAHTSHTLLAVPDPQTALKLLHEVEQFSHSEV--------------AL 71

Query: 101 VPSSDTFIEKDASINDHIEQMRLSATKALLERKDAIIVTTVSCIYGLGSPETYL-KMVLH 159
            P  +T    + S +  I   R+S    L      I +  VS +    SP  +L +  L 
Sbjct: 72  FPDWETLPYDNFSPHQDIISDRISRLYQLPSLTRGITIVPVSTLLQRQSPRDFLLQHTLI 131

Query: 160 VDRGDKLDQRELLRRLTSLQYTRNDMDFARATFRVRGDVIDIYPAESDLEAIRIELFDDE 219
           V RGD     +L  +L +  Y   D  F    +  RG ++D++P  S  +  RI+ FDDE
Sbjct: 132 VKRGDHFSLDKLRLQLENSSYRHVDQVFGPGEYASRGSILDLFPMGSS-DPFRIDFFDDE 190

Query: 220 VESLSAFDPLTGEVIRKLPRFTFYPKSHYVTPRETLMGAIEGIKVELAERLEYLRSNNKL 279
           ++++  FDP     I ++      P   +     T   AIE  +    +R E  R    +
Sbjct: 191 IDTIRTFDPDNQRSIAEMDEIRLLPAHEF----PTTAAAIEEFRNRWRQRFEARREPESV 246

Query: 280 VEAQRLEQRTRFDLEMILELGYCNGIENYSRYLSGRESGAPPPTLYDYLPPDA-LLVIDE 338
                           + +  +  GIE Y + L    S     TL+DYLP ++ LLV+ E
Sbjct: 247 -------------YSQVSKGTWPAGIE-YWQPLFFEHS----ETLFDYLPANSQLLVVGE 288

Query: 339 SHVSVPQ 345
              ++ Q
Sbjct: 289 LEKAIDQ 295



 Score = 33.9 bits (76), Expect = 4e-05
 Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 8/118 (6%)

Query: 415 GLVDPEIEIRPALTQVDDLLSEITKRVALEERVLVTTLTKRMSEDLTDYLADHGVRVRYL 474
           G    E+ +R A    D+      K+VA+   V  T L ++  E+  D  A+  +RV  L
Sbjct: 636 GFGKTEVAMRAAFVATDN-----GKQVAV--LVPTTLLAQQHFENFRDRFANLPIRVEVL 688

Query: 475 HSDIDTVERVEIIRDLRLGTFDVLVGIN-LLREGLDMPEVSLVAILDADKEGFLRSER 531
                  E+ +I++D+  G  D+LVG + LL   +   ++ L+ + +  + G  + E+
Sbjct: 689 SRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEIRFADLGLLIVDEEHRFGVRQKEK 746



 Score = 27.3 bits (59), Expect = 0.004
 Identities = 21/102 (20%), Positives = 43/102 (42%), Gaps = 30/102 (29%)

Query: 468 GVRVRYLHSDIDTVERV--------------------------EIIRDLRLGTFDVLVGI 501
           G +V +LH+ ++T+++V                          +++ D     F++LV  
Sbjct: 814 GGQVYFLHNQVETIDKVAADLEKLVPEARITVAHGQMRERELEKVMNDFYHQRFNLLVCT 873

Query: 502 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 543
            ++  G+D+P  + + +  AD  G  +    L Q  GR  R+
Sbjct: 874 TIIETGIDVPTANTIIMDRADSLGLAQ----LHQLRGRVGRS 911