Pairwise Alignments

Query, 671 a.a., excinuclease ABC subunit B from Pseudomonas simiae WCS417

Subject, 676 a.a., excinuclease ABC subunit UvrB from Vibrio cholerae E7946 ATCC 55056

 Score =  952 bits (2462), Expect = 0.0
 Identities = 478/672 (71%), Positives = 572/672 (85%), Gaps = 7/672 (1%)

Query: 4   FQLVTRFEPAGDQPEAIRQMVEGIEAGLAHQTLLGVTGSGKTFSIANVIAQINRPTLVLA 63
           F+LV+ ++PAGDQP AI+Q++EG+EAGLAHQTLLGVTGSGKTF++ANVIA   RPT++LA
Sbjct: 5   FELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTIILA 64

Query: 64  PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123
           PNKTLAAQLYGE KAFFPNNAVEYFVSYYDYYQPEAYVP++DTFIEKDAS+N HIEQMRL
Sbjct: 65  PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124

Query: 124 SATKALLERKDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRELLRRLTSLQYTRN 183
           SATKALLERKDA+IV +VS IYGLG P++YLKM+LH+ RGD ++QR++LRRL  LQY+RN
Sbjct: 125 SATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRN 184

Query: 184 DMDFARATFRVRGDVIDIYPAESDLEAIRIELFDDEVESLSAFDPLTGEVI-RKLPRFTF 242
           DM F R  FRVRG+VIDI+PAESD EA+R+E+FDDE+E +S FDPLTG +  R L RFT 
Sbjct: 185 DMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEIECISLFDPLTGVITSRDLARFTI 244

Query: 243 YPKSHYVTPRETLMGAIEGIKVELAERLEYLRSNNKLVEAQRLEQRTRFDLEMILELGYC 302
           YPK+HYVTPRE ++ AIE IK EL  R +YL  NNKL+E QR+ QRT+FD+EM+ ELG+C
Sbjct: 245 YPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304

Query: 303 NGIENYSRYLSGRESGAPPPTLYDYLPPDALLVIDESHVSVPQVGAMYKGDRSRKETLVE 362
           +GIENYSRYLSGR  G PPPTL+DYLP D LL+IDESHV+VPQ+GAM+KGDRSRKETLVE
Sbjct: 305 SGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLVE 364

Query: 363 YGFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYE-AEHAGRVIEQLVRPTGLVDPEI 421
           +GFRLPSALDNRP++FDE+EA++PQTIFVSATP  YE  +  G V EQ+VRPTGL+DP I
Sbjct: 365 FGFRLPSALDNRPLKFDEFEALAPQTIFVSATPSEYELTKSGGEVAEQVVRPTGLLDPII 424

Query: 422 EIRPALTQVDDLLSEITKRVALEERVLVTTLTKRMSEDLTDYLADHGVRVRYLHSDIDTV 481
           E+RP  TQVDDLLSE   R A +ER+LVTTLTKRM+EDLT+YL +HGV+VRYLHSDIDTV
Sbjct: 425 EVRPVATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSDIDTV 484

Query: 482 ERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 541
           ERVEIIRDLRLG FDVLVGINLLREGLDMPEV+LVAILDADKEGFLRSERSLIQT+GRAA
Sbjct: 485 ERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMGRAA 544

Query: 542 RNLNGRAILYADRITGSMERAIGETQRRRDKQIAFNLENGITPKGVFKDVADIMEGATVP 601
           RN+NG+AILYAD IT SM +AI ET+RRR+KQ+A+N + GITP+ + + V DIME   + 
Sbjct: 545 RNVNGKAILYADSITKSMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIMELGDIA 604

Query: 602 GSRSKKRK---GMAKAAEESAKYENELRSPSEITKRIRQLEEKMYQLARDLEFEAAAQTR 658
            SR +K      +AK AEESA Y  ++ +P ++ K I +LE  MYQ A++LEFE AAQ R
Sbjct: 605 KSRKQKNSKVVPLAKVAEESAAY--QVLTPQQLEKEISKLEAAMYQHAQNLEFELAAQKR 662

Query: 659 DEIGKLRERLLA 670
           DEI +LR++ +A
Sbjct: 663 DEIHQLRQQFIA 674