Pairwise Alignments

Query, 671 a.a., excinuclease ABC subunit B from Pseudomonas simiae WCS417

Subject, 673 a.a., excinuclease ABC, B subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  933 bits (2412), Expect = 0.0
 Identities = 465/673 (69%), Positives = 570/673 (84%), Gaps = 8/673 (1%)

Query: 2   SDFQLVTRFEPAGDQPEAIRQMVEGIEAGLAHQTLLGVTGSGKTFSIANVIAQINRPTLV 61
           S FQL ++F PAGDQP AI ++V+G+E+GLA QTLLGVTGSGKTF+IANVIA++ RPT++
Sbjct: 4   SVFQLESQFAPAGDQPTAIAKLVDGLESGLACQTLLGVTGSGKTFTIANVIAKLGRPTII 63

Query: 62  LAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQM 121
           +APNKTLAAQLYGE K FFPNNAVEYFVSYYDYYQPEAYVP+S+TFIEKDAS+N HIEQM
Sbjct: 64  MAPNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPASNTFIEKDASVNAHIEQM 123

Query: 122 RLSATKALLERKDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRELLRRLTSLQYT 181
           RLSATKALLERKD +++ +VS IYGLG P++YLKM+LH+ +GD + QR++L+RL+ LQYT
Sbjct: 124 RLSATKALLERKDVVLIASVSAIYGLGDPDSYLKMLLHLRQGDTMGQRDILKRLSELQYT 183

Query: 182 RNDMDFARATFRVRGDVIDIYPAESDLEAIRIELFDDEVESLSAFDPLTGEVIRKLPRFT 241
           RND++  R TFRVRG+VIDI+PA+SD  AIR+ELFDDE+E LS FDPLTG++++++ R T
Sbjct: 184 RNDIELQRGTFRVRGEVIDIFPADSDRYAIRVELFDDEIERLSEFDPLTGQIVKRIARTT 243

Query: 242 FYPKSHYVTPRETLMGAIEGIKVELAERLEYLRSNNKLVEAQRLEQRTRFDLEMILELGY 301
            YPK+HYVTPRE ++ A E IK EL ER +YL  NNKL+EAQR+ +R ++D+EM++ELGY
Sbjct: 244 VYPKTHYVTPREKILEATELIKQELRERKQYLLDNNKLIEAQRIHERVQYDIEMMVELGY 303

Query: 302 CNGIENYSRYLSGRESGAPPPTLYDYLPPDALLVIDESHVSVPQVGAMYKGDRSRKETLV 361
           C+GIENYSRYLSGR  G  PPTL DYLP D LLVIDESHV+VPQ+GAMYKGDRSRK TLV
Sbjct: 304 CSGIENYSRYLSGRAPGEGPPTLLDYLPADGLLVIDESHVTVPQIGAMYKGDRSRKTTLV 363

Query: 362 EYGFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEAEHA-GRVIEQLVRPTGLVDPE 420
           EYGFRLPSALDNRP++F+E+E + PQTI+VSATP +YE E + G ++EQ+VRPTGL+DPE
Sbjct: 364 EYGFRLPSALDNRPLKFEEFEQLMPQTIYVSATPNSYELEKSGGEIVEQVVRPTGLLDPE 423

Query: 421 IEIRPALTQVDDLLSEITKRVALEERVLVTTLTKRMSEDLTDYLADHGVRVRYLHSDIDT 480
           +E+RP   QVDDLLSE+ KRVA+ ERVLVTTLTKRMSEDLT+YL +HGV+VRYLHSDIDT
Sbjct: 424 LEVRPVGIQVDDLLSEVAKRVAVNERVLVTTLTKRMSEDLTEYLDEHGVKVRYLHSDIDT 483

Query: 481 VERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 540
           VERVEIIRDLRLG FDVLVGINLLREGLDMPEVSLV ILDADKEGFLRSERSLIQTIGRA
Sbjct: 484 VERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIGRA 543

Query: 541 ARNLNGRAILYADRITGSMERAIGETQRRRDKQIAFNLENGITPKGVFKDVADIMEGATV 600
           ARN+NG+ ILYADRIT SM +AIGET+RRR+KQ  +NLE+GI PKGV K + D+M+    
Sbjct: 544 ARNVNGKVILYADRITNSMAKAIGETERRREKQRLYNLEHGIVPKGVVKRITDVMD--VD 601

Query: 601 PGSRSKKRKGMA---KAAEESAKYENELRSPSEITKRIRQLEEKMYQLARDLEFEAAAQT 657
            G  ++K  G A   + AE  AK  +     ++++  I +LE++M++ AR+LEFE AA  
Sbjct: 602 DGREAEKGHGQASLGRVAEPKAKRYH--ADAAQLSHDIDKLEKQMHEHARNLEFEQAAAL 659

Query: 658 RDEIGKLRERLLA 670
           RDE+ +LRE L++
Sbjct: 660 RDEVKRLRELLIS 672