Pairwise Alignments

Query, 1098 a.a., histidine kinase from Pseudomonas simiae WCS417

Subject, 852 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

 Score =  363 bits (932), Expect = e-104
 Identities = 221/569 (38%), Positives = 318/569 (55%), Gaps = 19/569 (3%)

Query: 528  SEAALKASEEKFAKAFHSSPDAISITERDTGRYVEVNDGFCRLTGYRAEEAIGLTLYQIG 587
            S +AL  SEE+F     ++ D I  T+ D  R   +++ F ++TG+   E +G  L ++ 
Sbjct: 303  SRSALAESEERFRDVAEAASDWIWETD-DQARLTFLSNRFRQITGHEPREWLGRPLLELL 361

Query: 588  IWADENQRAALLAELQIKGRINYLEMLWHNKRGELLAVEVSVEPITLNETPCLLLTARDV 647
            I       + L A      R +Y       +   L A  +  +   +        TA DV
Sbjct: 362  ISDSAALHSWLEAPEITPLRSSYRAADGCERFCRLAARSIQHDGKLVGYRG----TASDV 417

Query: 648  SLLKNAQAQIRHLAYHDPLTNLPNRALLMDRLSQQIALLKRHNLRGALLFLDLDHFKHIN 707
            +    AQA++++L+ HDPLT LPNR+ L D L Q +A L+  +    LL++DLD FK +N
Sbjct: 418  TEETKAQARVQYLSQHDPLTGLPNRSRLRDYLEQNLASLRSGSTM-TLLYIDLDRFKPVN 476

Query: 708  DSLGHPVGDTVLKIVTARLEASVRMEDTVARLGGDEFVVLLSGLDGTRTEVSNQVQELAD 767
            D+LGH  GD VL  V +RL    R  D VARLGGDEFVV L      R      +  L +
Sbjct: 477  DTLGHAAGDEVLMGVASRLRERTRDGDLVARLGGDEFVVALH-----RMSEDEDIDRLCN 531

Query: 768  TLRELLSEPMFLDGHRLQVTPSIGVALIPDHGSTPADLLKRADIALYRAKDSGRNTTQMF 827
             + E LS P   + H++ +  SIGVAL P   +   +LL+ ADIALY+AKD+GR T + +
Sbjct: 532  RIIEALSSPFAYENHQISIGASIGVALAPMDATQANELLRCADIALYQAKDAGRGTWRAY 591

Query: 828  HNSMQKTASERLRMETDLRLALSRGEFSVHYQPQVDARGNRIVGAEALVRWQHPQLGAQS 887
               M +   ERLR E  LR+A++     VHYQP+  ++G RI+GAEALVRW HP  G   
Sbjct: 592  GRDMDQRLHERLRREEQLRVAIAEQHLEVHYQPRYLSQGMRIIGAEALVRWHHPTHGLLL 651

Query: 888  PSEFIKVLEDSGLILEVGTWILDEACAAFQQLIAEGLVDPLNFSLCVNISPRQFRQNDFV 947
            P +FI + E++GLI+ +G W+L +AC        +    P++  + VN+SP Q   +  +
Sbjct: 652  PEQFIPLAEETGLIIPLGRWVLQQAC-------QQAATWPVDMVVSVNLSPLQLHDDRLL 704

Query: 948  ERVERSLKQHKLPFSLLKLEITEGIVIQNLDDTISKMRRLKKLGVSFAMDDFGTGYSSLT 1007
            + + ++L ++ L    L+LEITE  ++Q    T+  ++R+K LGV  A+DDFGTGYSSLT
Sbjct: 705  DEISQALHENGLAGERLELEITESALLQETQSTLDLLKRIKALGVHLAVDDFGTGYSSLT 764

Query: 1008 YLKRLPVDALKIDQSFVRDATHDPNDAEIIRAIVAMARSLNLEVIAEGVETQDQLAFLQG 1067
             L+  P D +KID SFV        D  I+RA++ + R L + V AEGVET++QL  L  
Sbjct: 765  SLRHYPFDVIKIDNSFVAGIEQSMEDHSIVRALIELGRGLQMRVTAEGVETEEQLRLLTD 824

Query: 1068 LGCHLYQGYLHSRPLPMIGFRERLLAGEG 1096
             GC   QG+  S P+P    R RLLAG G
Sbjct: 825  DGCTEVQGFHMSLPMPAEELR-RLLAGAG 852