Pairwise Alignments
Query, 853 a.a., peptidoglycan-binding protein from Pseudomonas simiae WCS417
Subject, 1621 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056
Score = 71.6 bits (174), Expect = 3e-16
Identities = 152/704 (21%), Positives = 253/704 (35%), Gaps = 115/704 (16%)
Query: 144 PAPRLAAPASTAPAVSKPAQH--TTTSRDTLWEIAAKNRNGGSV--QQTMLAIQALNPDA 199
P P+ + A ++P + T++ TLW IA++ R SV QQT+LAI LNP A
Sbjct: 60 PTPQYSENIVRNSANNEPGRFFGPTSANQTLWSIASQLRPSSSVTVQQTLLAIYQLNPQA 119
Query: 200 FIDGNINRLKTGQVLRLPDPVQSTSLPQPQAIAEVSAQNAAWRQGRRAANNPAAGKQQLD 259
F + NI+ L G LR+P Q + A+ +++ A Q P A +
Sbjct: 120 FENQNIHTLIPGSTLRVPSLAQISRNSTQDAVNIMASHQAKLNQTPDTPVRPVAPPR--P 177
Query: 260 ATKRTQAGNAPASTGAKDNLSLVSAEAAKKGVKGKAGDSAALSDKLAMTQEQLDTTRRDN 319
A T A A T + + E A +K A S + ++ +E+ T R
Sbjct: 178 APVATPKVEAVAQTPPQVTPTTAPQEKAPTELKTPAKPSQSTDAEVMALEEKNHTLRLML 237
Query: 320 EELKSRAADLQSQLDKLQKLIQLKNDQLARLQAEKGTPAAPATAAMPAQLAGEPVAAPAV 379
+++S + L+ +L ++ ++ RL E+ A A+ P+ L
Sbjct: 238 SQVQSEVSTLKEELGDENRI----RSEVERLLEEERRKAEEASRLAPSAL---------- 283
Query: 380 PDAATATPAPAAPAPEPVKADATPASAEGKFNDLLTNPVVLGVIGGAAGLLVLLLLLLWV 439
++LL+N ++ ++ GLL+ +++LL +
Sbjct: 284 -------------------------------DNLLSNGWLVALLALIPGLLIAIVVLLLL 312
Query: 440 RHRNARREEE-------KHLRMARALAEEPVFTSNIDQDLPPDSFEGLEVPPPNVKLAAA 492
R++ ++E + A + P T +I DL D L +
Sbjct: 313 NRRSSAQQENPTQNNITSEMPTAAPVTLGPEQTEDIGDDLLLDD-----------DLFST 361
Query: 493 PTPTPTVEPAVAVPTVASVLAPLAVAVAPVN--ASDALAQAQSLVDRGHLNQAADVLEQA 550
+ A V A L N D+ + D G L+ D L ++
Sbjct: 362 TDDKEENDAEKAFSDEDDVFADLNETDLDFNLDGQDSDDLFVGIDDDGDLDTEFDALNES 421
Query: 551 IKQEPKRSDLRLKLMEVYGLQNNKDGFVTQERQLVANGENHAQVEQLKSRFPAMAVLAAG 610
+D + +E N T L N + A Q+ +
Sbjct: 422 ANGISVNADDKALGLEEMERALNDVSEPTDNDDL--NSFDLADENQMSEDDIEALLSGDE 479
Query: 611 VSAAVAAAALDAQYVKDLLEDKPAPAATEPEAFDTDFDLSLDDLEEASPAEAKDDQQTFE 670
+ ++ +D + DLL A+E +A D + A D +T +
Sbjct: 480 ENELLSDGKVDQSLLDDLL-------ASELDALDDE--------------PAIQDTETLD 518
Query: 671 SLLQQQTEAKAAPDDLSDFDLDLQLDGPASAQSDDDFLSGLEEQMKDVPPVEPPTLAPTA 730
+LL + + + D D + DL G A Q DD + +EEQ D+ +E + TA
Sbjct: 519 TLLNDELASLSEED---DDEFDLSGAGVAGDQDLDDLFASIEEQ-ADLEQLEAKAIDETA 574
Query: 731 LDDFDLPEDFDLSLADEPEAAAKPDAFASELDDV----NAELDRLSQSLEHPSIEPSFTA 786
L D L E D P + + LDD N E D + L P
Sbjct: 575 LLDEILAEQ------DAPLSEESTELLDELLDDFDKPENDEFDAQTADLLQPEEPILDLE 628
Query: 787 EDAAQ------GDDEPEFDFLSGTDEVATKLDLAQAYIDMGDAD 824
ED+ Q G+ PE + SG + +L +D D D
Sbjct: 629 EDSTQLLNEVLGEPVPE-ELASGLEIDQNSTELLDELLDDLDLD 671
Score = 60.5 bits (145), Expect = 8e-13
Identities = 120/462 (25%), Positives = 176/462 (38%), Gaps = 74/462 (16%)
Query: 444 ARREEEKHLRMARALAEEPVFTSNIDQDLPP----DSFEGLEVPPPNVKLAAAPTPTPTV 499
A E E L +A L EE FT + DLP D+ ++ P V+ P
Sbjct: 1171 AESEVESELELASDLEEEEPFTELNELDLPEYTEEDALADAQLEPA-VESEVEPELELAT 1229
Query: 500 EPAV--AVPTVASVLAPLAVAVAPVNASDALAQAQSLVDRGHLNQAADV-----LEQAIK 552
EPA A P + + P DALA AQ L AA+ LE A
Sbjct: 1230 EPAEEEAFPELDELDLP------EYTEEDALADAQ-------LEPAAEAEVEPELELASD 1276
Query: 553 QEPKRSDLRLKLMEVYGLQNNKDGFVTQERQLVANGENHAQVE-----QLKSRFPAMAVL 607
E K + L +++ +D + + A E ++E + + F + L
Sbjct: 1277 LEEKETFTELDELDLPEY-TEEDALADAQLEPAAESEVEPELELASVLEEEDSFTELDEL 1335
Query: 608 AAGVSAAVAAAALDAQY-------VKDLLEDKPAPAA--TEPEAFDTDFDL--SLDD-LE 655
A A DAQ V+ L D+ A TE +A D DL S++ ++
Sbjct: 1336 DLPEYTEKDALA-DAQLEPAAESEVEPELGDETETLAQETESDALVADEDLLASVESAVD 1394
Query: 656 EASPA--EAKDDQQTFESLLQQQTEAKAAPDDLSD-------FDLDLQLDGPASAQSDDD 706
E P A D +SL + + +A D LSD F D LD + D
Sbjct: 1395 EVQPELLGATQDVPPTQSLANKAFDEEALHDWLSDNPDGEKPFSFDRPLDAKTIDSAGMD 1454
Query: 707 FLSGLEEQMKDVPPVEPPTLAPTALDDFDLPEDFDLSLADE-PEAAAKPDAFASELDDVN 765
+ L+ +D L D D+PED A E PE AKP+ + S+ D ++
Sbjct: 1455 IDAMLQMGGEDWNGFHLTPDQQAQLPD-DVPEDEQAIWASETPEPQAKPENWGSQEDLLD 1513
Query: 766 AELDRLSQSLEHPSIEPSFTAEDAAQGDDEPEFDFLSGTDE------------------V 807
+ R + + +E+ DE E G DE
Sbjct: 1514 FDPQR-DGYMTIDELMAQVESEEQGLNPDEEELKLDVGLDEFPDVIGDIRDIDVDSGAEA 1572
Query: 808 ATKLDLAQAYIDMGDADGARDILSEVLTEGDEAQRGEAKEML 849
A KLDLA+ YI+M D GA +L E + +GD+ R +AK ++
Sbjct: 1573 AGKLDLAKIYIEMNDEKGAIKLLEEAIVDGDDEIRQQAKRLI 1614
Score = 43.1 bits (100), Expect = 1e-07
Identities = 127/544 (23%), Positives = 192/544 (35%), Gaps = 80/544 (14%)
Query: 330 QSQLDKLQKLIQLKNDQLARLQAEKGTPAAPATAAMPAQLAGEPVAAPA-VPDAATATPA 388
Q + Q + + A+L TP P PA +A V A A P T T A
Sbjct: 141 QISRNSTQDAVNIMASHQAKLNQTPDTPVRPVAPPRPAPVATPKVEAVAQTPPQVTPTTA 200
Query: 389 PAAPAPEPVKADATPA-SAEGKFNDLLTNPVVLGVIGGAAGLLVLLLLLLWVRHRNARRE 447
P AP +K A P+ S + + L L ++ V L R E
Sbjct: 201 PQEKAPTELKTPAKPSQSTDAEVMALEEKNHTLRLMLSQVQSEVSTLKEELGDENRIRSE 260
Query: 448 EEKHLRMARALAEEP--VFTSNIDQDLPPDSFEGLEVPPPNVKLA-----------AAPT 494
E+ L R AEE + S +D L L P + +A +A
Sbjct: 261 VERLLEEERRKAEEASRLAPSALDNLLSNGWLVALLALIPGLLIAIVVLLLLNRRSSAQQ 320
Query: 495 PTPTVEPAVA-VPTVASVLAPLAVAVAPVNASDALAQAQSLVDRGHLNQAADVLEQ--AI 551
PT + +PT A V + P D L+ L D E+ A
Sbjct: 321 ENPTQNNITSEMPTAAPV------TLGPEQTEDI---GDDLLLDDDLFSTTDDKEENDAE 371
Query: 552 KQEPKRSDLRLKLMEVYGLQNNKDGFVTQERQLVANGENHAQVEQLKSRFPAMAVLAAGV 611
K D+ L E L N DG + + + + + L + F A+ A G+
Sbjct: 372 KAFSDEDDVFADLNET-DLDFNLDGQDSDDLFVGIDDDG-----DLDTEFDALNESANGI 425
Query: 612 SAAVAAAALDAQYVKDLLEDKPAPAATEPEAFDTDFDLSLDDLEEASPAEAKDDQQTFES 671
S AL + ++ L D P D D DL+ DL + + D E+
Sbjct: 426 SVNADDKALGLEEMERALNDVSEPT-------DND-DLNSFDLADENQMSEDD----IEA 473
Query: 672 LLQQQTEAKAAPDDLSDFDLDLQLDGPASAQSDDDFLSGLEEQMKDVPPVEPPTLAPTAL 731
LL D + +L DG DD L+ + + D P ++ T L
Sbjct: 474 LLS------------GDEENELLSDGKVDQSLLDDLLASELDALDDEPAIQDTETLDTLL 521
Query: 732 DD------FDLPEDFDLSLA--------DEPEAAAKPDAFASELD----DVNAELDRLSQ 773
+D + ++FDLS A D+ A+ + A +L+ D A LD +
Sbjct: 522 NDELASLSEEDDDEFDLSGAGVAGDQDLDDLFASIEEQADLEQLEAKAIDETALLDEILA 581
Query: 774 SLEHPSIEPSFTAEDAAQGD-DEPEFDFLSGTDEVATKLDLAQAYIDMGDADGARDILSE 832
+ P E S D D D+PE D + A L + +D+ + + +L+E
Sbjct: 582 EQDAPLSEESTELLDELLDDFDKPENDEFDA--QTADLLQPEEPILDL--EEDSTQLLNE 637
Query: 833 VLTE 836
VL E
Sbjct: 638 VLGE 641
Score = 39.3 bits (90), Expect = 2e-06
Identities = 51/211 (24%), Positives = 80/211 (37%), Gaps = 40/211 (18%)
Query: 627 DLLEDKPAPAATEPEAFDTDFDLSLDDLEEASPAEAKDDQQTFESLLQQQTEAKAAPDDL 686
DL + PA D D+ DD A+ + + E L +QT A D
Sbjct: 770 DLSQPSALPANEFGTPQDEDWVFDEDDSSPTLEGNAELELSSAEDDLPEQTTATNETADE 829
Query: 687 SDFDLDLQLDGPASAQSDDDFL-SGLEEQMKDVPPVEPPTLAPTALDDFDLPEDFDLSLA 745
DL Q SDD GL + +++ P L+D +LPE+
Sbjct: 830 LLADLAAQPQSNTVDTSDDALAPDGLSQSVEE----------PLTLNDLELPEE-----N 874
Query: 746 DEPEAAAKPDAFASELDDVNAELDRLSQSLEHPSIE-------------PSFTAED---- 788
DEP+ A + A + V E++ S+ L + P +T ED
Sbjct: 875 DEPQLAEVTPSSAFDEQQVETEIEPESEPLAAEASNDESDLTALNELDLPEYTEEDVLAD 934
Query: 789 -----AAQGDDEPEFDFLSG--TDEVATKLD 812
AA+ + EP+ + ++ T+E T+LD
Sbjct: 935 VQLEPAAESEVEPDLELVNEPVTEEAFTELD 965
Score = 35.0 bits (79), Expect = 4e-05
Identities = 49/188 (26%), Positives = 80/188 (42%), Gaps = 30/188 (15%)
Query: 629 LEDKPAPAATEPE-AFDTDF--DLSLDDLEEASPAEAKDDQQTFESLLQQQTEAKAAPDD 685
+E P A + PE A + +F D +DDL ++PA+ + LL+ + A
Sbjct: 702 IEQHPESAESLPELATEDEFNSDTFIDDLLNSAPAK--------DPLLEPVLDENEAFAQ 753
Query: 686 LSDFDLDLQLDG-------PASAQSDDDFLSGLEEQMKDVPPVEPPTLAPTALDDF---- 734
DFD + +++G SA ++F + +E PTL A +
Sbjct: 754 ADDFDFNPEIEGGLEDDLSQPSALPANEFGTPQDEDWVFDEDDSSPTLEGNAELELSSAE 813
Query: 735 -DLPEDFDLS--LADE--PEAAAKPDAFASELDDVNAELDRLSQSLEHPSIEPSFTAEDA 789
DLPE + ADE + AA+P + + D D LSQS+E P + +
Sbjct: 814 DDLPEQTTATNETADELLADLAAQPQSNTVDTSDDALAPDGLSQSVEEPL---TLNDLEL 870
Query: 790 AQGDDEPE 797
+ +DEP+
Sbjct: 871 PEENDEPQ 878