Pairwise Alignments

Query, 517 a.a., D-ribose ABC transporter, ATPase component RbsA (from data) from Pseudomonas simiae WCS417

Subject, 504 a.a., sugar uptake ABC transporter ATP-binding protein from Sinorhizobium meliloti 1021

 Score =  359 bits (921), Expect = e-103
 Identities = 204/483 (42%), Positives = 296/483 (61%), Gaps = 16/483 (3%)

Query: 24  LSDITLTLNRGEVLALTGENGAGKSTLSKIIGGLVTPTTGHMQFNGQDFRPGSRTQAEEL 83
           L  +   +  GEV AL GENGAGKSTL +++GG + P+ G +  NG+         A  L
Sbjct: 21  LRSVNFDVRPGEVHALLGENGAGKSTLMRVLGGEIIPSQGEVVINGKRTELRDPRDARAL 80

Query: 84  GVRMVMQELNLLPTLTVAENLFLDNLPSHCGWISRKQLRKAAIEAMAQVGLDAIDPDTLV 143
           G+ ++ QEL L P L+VAEN+FL  LP+    ISR  LR+ A + + ++G D IDP  LV
Sbjct: 81  GIVVIHQELALAPDLSVAENIFLGELPT---LISRFSLRRRAKQLIDRLGFD-IDPGRLV 136

Query: 144 GSLGIGHQQMVEIARNLIGDCHVLILDEPTAMLTAREVEMLFEQITRLQARGVAIIYISH 203
           G+L + HQQ+VEIA+ L  D  +++ DEPTA+L A++   L + I  L+ RGV I+YISH
Sbjct: 137 GTLSVAHQQVVEIAKALSQDIKIIVFDEPTAVLGAQDAMKLHQIIRGLRDRGVGIVYISH 196

Query: 204 RLEELARVAQRIAVLRDGKLVCVEPMANYNSEQLVTLMVGRELGEHI-DLGPRTIGGPAL 262
           RL+E+  +A R+ V++DG+ V      +   + ++ +MVGR +     +   RTIG   L
Sbjct: 197 RLDEVFDIADRMTVMKDGETVGTVATTDVKIDDIIRMMVGRPIANMFPERSQRTIGAELL 256

Query: 263 TVKGLTRSDKVRDVSFEVRAGEIYGISGLIGAGRTELLRLIFGADLADSGTVALGSPAQV 322
            VK L     VRDVSF VRAGEI G+ GLIG+GRTE+ R IFGAD  DSGT++L   A  
Sbjct: 257 NVKKLNAGRMVRDVSFSVRAGEIVGLGGLIGSGRTEVARAIFGADPLDSGTISLKGKA-- 314

Query: 323 VSIRSPVDAVGHGIALITEDRKGEGLLLTQSISANIALGNMPEISGG-----GVVNSRDE 377
           + ++SP DAV  GI L+ EDRK  G+++ + I  N  +  M  +          +   D 
Sbjct: 315 LKLKSPRDAVKAGIGLVPEDRKEHGVVIDKPIRVNATMARMSSVVNALGFLKPALERTDV 374

Query: 378 TALAKRQIDAMRIRSSSPAQLVSELSGGNQQKVVIGRWLERDCSVMLFDEPTRGIDVGAK 437
           TAL K    ++R+++SS    VS LSGGNQQKVV+ +W      V++ DEPTRG+DVGAK
Sbjct: 375 TALGK----SLRLKASSIDAPVSSLSGGNQQKVVLAKWFHAGGDVIILDEPTRGVDVGAK 430

Query: 438 FDIYALLGELTRQGKALVVVSSDLRELMLICDRIGVLSAGRLIETFERDSWTQDELLAAA 497
            +IYAL+ +L   GKA++V+SS+ +EL  +CDR+  +  G++       +++++ LL  +
Sbjct: 431 AEIYALINKLAEDGKAVLVISSEHQELFGLCDRVLAMGQGQIRGELTPSNYSEENLLGLS 490

Query: 498 FAG 500
             G
Sbjct: 491 MMG 493



 Score = 65.5 bits (158), Expect = 4e-15
 Identities = 55/233 (23%), Positives = 110/233 (47%), Gaps = 8/233 (3%)

Query: 15  IGKTYAQPVLSDITLTLNRGEVLALTGENGAGKSTLSKIIGGLVTPTTGHMQFNGQDFRP 74
           + K  A  ++ D++ ++  GE++ L G  G+G++ +++ I G     +G +   G+  + 
Sbjct: 258 VKKLNAGRMVRDVSFSVRAGEIVGLGGLIGSGRTEVARAIFGADPLDSGTISLKGKALKL 317

Query: 75  GSRTQAEELGVRMVMQELNL------LPTLTVAENLFLDNLPSHCGWISRKQLRKAAIEA 128
            S   A + G+ +V ++          P    A    + ++ +  G++ +  L +  + A
Sbjct: 318 KSPRDAVKAGIGLVPEDRKEHGVVIDKPIRVNATMARMSSVVNALGFL-KPALERTDVTA 376

Query: 129 MAQ-VGLDAIDPDTLVGSLGIGHQQMVEIARNLIGDCHVLILDEPTAMLTAREVEMLFEQ 187
           + + + L A   D  V SL  G+QQ V +A+       V+ILDEPT  +       ++  
Sbjct: 377 LGKSLRLKASSIDAPVSSLSGGNQQKVVLAKWFHAGGDVIILDEPTRGVDVGAKAEIYAL 436

Query: 188 ITRLQARGVAIIYISHRLEELARVAQRIAVLRDGKLVCVEPMANYNSEQLVTL 240
           I +L   G A++ IS   +EL  +  R+  +  G++      +NY+ E L+ L
Sbjct: 437 INKLAEDGKAVLVISSEHQELFGLCDRVLAMGQGQIRGELTPSNYSEENLLGL 489