Pairwise Alignments

Query, 325 a.a., D-ribose ABC transporter, permease component RbsC (from data) from Pseudomonas simiae WCS417

Subject, 333 a.a., ribose ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  184 bits (467), Expect = 3e-51
 Identities = 111/294 (37%), Positives = 159/294 (54%), Gaps = 6/294 (2%)

Query: 26  ALLAMIALFSVLSDHFLSYDTFSTLANQIPDLMVLAVGMTFILIIGGIDLSVGSVLALAA 85
           ALL ++ + S L+ +F + D    +  Q     ++AVGMT +++  GIDLSVGSVLAL  
Sbjct: 37  ALLFLVVVVSFLNPNFFTVDNLLNILRQTSVNAIIAVGMTLVILTAGIDLSVGSVLALCG 96

Query: 86  SAVSVAILGWGWSVLPAAVLGMGCAALAGTITGSITVAWRIPSFIVSLGVLEMARGVAYQ 145
            A +  ++     VL A    +   A  G I+G I    ++ +FI +L  + + RGV   
Sbjct: 97  -AFAATLVAMEVPVLVAVPTALLAGAALGAISGIIIAKGKVQAFIATLVTMTLLRGVTMV 155

Query: 146 MTGSRTAYIG-----DSFAWLSNPIAFGISPSFIIALLVIIAAQLVLTRTVFGRYLIGIG 200
            T  R    G     D+FAW       GI     + ++V   A  +L  T FGRY+  +G
Sbjct: 156 YTDGRPISTGFTDTADTFAWFGTGYTLGIPVPVWLMVVVFAGAWYLLNHTRFGRYVYAVG 215

Query: 201 TNEEAVRLAGINPKPYKILVFSLMGLLAGVAALFQISRLEAADPNAGSGLELQVIAAVVI 260
            NE A RL+GIN    KI V+++ GLLA +A +   SRL +A P AG G EL  IAAVV+
Sbjct: 216 GNESATRLSGINVDRVKIGVYAICGLLAALAGIIVTSRLSSAQPTAGMGYELDAIAAVVL 275

Query: 261 GGTSLMGGRGSVISTFFGVLIISVLAAGLAQIGATEPTKRIITGAVIVIAVVLD 314
           GGTSLMGG+G ++ T  G LII  L   L  +  +   + I    VI++AV++D
Sbjct: 276 GGTSLMGGKGRIMGTLIGALIIGFLNNALNLLDVSSYYQMIAKAVVILLAVLVD 329