Pairwise Alignments

Query, 235 a.a., 16S rRNA methyltransferase from Pseudomonas simiae WCS417

Subject, 249 a.a., conserved hypothetical protein TIGR00046 (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 44.7 bits (104), Expect = 2e-09
 Identities = 61/227 (26%), Positives = 95/227 (41%), Gaps = 42/227 (18%)

Query: 26  HMQEVHRAVVGDSLRVGRIGGLMGNAQLLRLEATEAELQVSVDQPPPAKLPLTLLLALPR 85
           H+ +V R   GD +R+    G  G   + R+  T      SV+  P +      +   P 
Sbjct: 24  HLTKVVRVHAGDLIRLLDGAGREG---VFRVTGTSRN---SVELTPES------ITTHPE 71

Query: 86  PKMLRRVLQTVAAMGVPKVVLVNSYRVEKS---------FWQTPFLE---PEAIRE---- 129
           P     V + V A+G  K V   S+ +EK+          WQ    +   P+ I+E    
Sbjct: 72  P-----VSRAVLAVGWGKAVR-RSWLMEKAVELEASAIWLWQAEHSQSPVPDDIKESWLA 125

Query: 130 QLILGLEQARDTVLPEIIIEKRFKPFVEDRLPAMAAGSLGLIGHPGDYP-----ACPRGL 184
           Q++ G +Q+ +  LP +   +     +E+ L A +      +   G+ P     A   G 
Sbjct: 126 QMVAGAKQSANPWLPAL---QTLPGGIEELLRASSDFERRFMLWEGETPEALLEAKDVGG 182

Query: 185 DEPVTLAIGPEGGWIPYEVDLLTQAGLQPVQLGARILRVETAVTALL 231
                  +GPEGG+   EV  L + G+ PV LG R+LR ETA    L
Sbjct: 183 VGTTLYVVGPEGGFSAREVKALREGGMMPVSLGQRVLRWETAALLCL 229