Pairwise Alignments

Query, 394 a.a., hemolysin D from Pseudomonas simiae WCS417

Subject, 386 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella loihica PV-4

 Score =  325 bits (834), Expect = 1e-93
 Identities = 183/364 (50%), Positives = 249/364 (68%), Gaps = 8/364 (2%)

Query: 18  SLIVLAM-LGGCSGGEPPPE-AVTPK---VSVISIKPQSQVLTTELAGRTQAFMVAQIRP 72
           SL+ +A+ + GC   E     A  P+   V V+ +  Q Q +  EL GR++A++ A++RP
Sbjct: 9   SLVSVALWITGCGQDENQGHSAAAPRSMEVGVVQVVEQPQAIQVELPGRSKAYLEAEVRP 68

Query: 73  QVGGIVQRRLFVEGADVKVGQALYQLDAASYTAALAQAEASLAKYRATLKSAQATARRDA 132
           QV GI+  R FVEG +V  GQ+LYQ+D+++Y AAL  AEA LA+  A+L SA+A A R  
Sbjct: 69  QVSGIITERGFVEGGEVTEGQSLYQIDSSTYKAALVSAEADLARANASLVSAKAKAARYK 128

Query: 133 ELVKINAISQQDNEDAQATLLTAAADVQGAEADVQTARINLAYTRITSPVGGRIETSTVT 192
            L+K +AISQQD ++A A    A A+V  A+A + TA+INL YT++ +P+ GRI  S+VT
Sbjct: 129 ALIKTDAISQQDFDEADALYKEALANVTVAKAAINTAKINLEYTQVKAPISGRIGKSSVT 188

Query: 193 PGALVVANQDSALTTVQQLDPIYVDVTQSTTELLKLKRDLASGALQSNGDGQARVSLKLD 252
            GALV ANQ +AL T+QQLDPI VD+ QS+ +LL+LK  L  G LQ+  +  A V L L+
Sbjct: 189 AGALVTANQSAALATIQQLDPINVDIAQSSAQLLRLKAKLKQGQLQAADN--ADVRLILE 246

Query: 253 DGSAYNQQGRLKVSGVSVNEGTGTVTLRAEFANPDHLLLPGMYVRAVLEQARNEQAILVP 312
           DG+AY   G L+ + VSV+E TG+VTLRAEF NPD +LLPGMYVRAVL    + +AILVP
Sbjct: 247 DGTAYEHMGSLRFAEVSVDENTGSVTLRAEFPNPDGVLLPGMYVRAVLNAGTDPKAILVP 306

Query: 313 QKAVNRSASGVTTALLV-VDGKVEQRELTIDRAVGNQWWVTAGLQAGDQLIVEGGQKVRA 371
           QKAV R+  G   A+++  + KVE R +T    + +QW +T+GL+AGDQLIVEG QK+R 
Sbjct: 307 QKAVTRNTKGQAVAMVIGAESKVEPRVVTTAEVIDHQWRITSGLKAGDQLIVEGLQKIRP 366

Query: 372 GAAV 375
           GA V
Sbjct: 367 GAPV 370