Pairwise Alignments

Query, 1044 a.a., multidrug transporter from Pseudomonas simiae WCS417

Subject, 1043 a.a., multidrug efflux RND transporter permease subunit from Rhodopseudomonas palustris CGA009

 Score =  942 bits (2436), Expect = 0.0
 Identities = 496/1044 (47%), Positives = 700/1044 (67%), Gaps = 7/1044 (0%)

Query: 1    MAHFFIDRPIFAWVIAIVIMLGGSLSISQLPLEQYPDIAPPTVKISATYTGASAKTVEDS 60
            MA FFI RPIFAWV+AI I L G L++  LP+ QYP IAPP++ I+  Y GAS + +   
Sbjct: 1    MASFFIARPIFAWVVAIFICLAGVLALPFLPVAQYPIIAPPSISIATVYPGASTQNLYYG 60

Query: 61   VTQVIEQQMKGLDNLTYMSATSSSAGSASISLTFTAGTDPDVAQMQVQNKLQQAESRLPQ 120
            VT++IE+++ G   +    +TS + G   I  +F  GTD   A + VQN++++ E RLP+
Sbjct: 61   VTRLIEEELNGAAGILSYESTSDTTGEVEIVASFQPGTDIAQATVDVQNRIKRIEPRLPE 120

Query: 121  SVQSEGLTVTKGGSDFLMIVALASDDPSVTGTQIGDYISTTLLDSISRIDGVGDVQTLGS 180
            +V+ EG+ +T+  S  L  V L S D S+    +GD  +  +L  + R+ GVG V+   +
Sbjct: 121  AVRKEGIAITEASSAILQFVTLTSSDNSLDEIGLGDVATRYVLPELRRLRGVGRVRLFST 180

Query: 181  GYAMRIWLDPALLEKYALMPSDISSALEAQNTEVSAGQLGALPAIKGQQLNATISARSKL 240
              AMRIWLDP  L    L   D+ SA+ AQN  V++G LG  P    Q+L   +  + +L
Sbjct: 181  ERAMRIWLDPDKLLGLGLTAQDVDSAIAAQNAPVASGLLGVQPTPVQQRLQNMVLVKGQL 240

Query: 241  QTVDEFRKVVVKSNSDGAVVLLGDVATLELGSESYDISTALNGKPAAAMGVQLAAGANAL 300
             +++EF  +V+++N +G+ V L DVA LE+G  +Y  ST L+G+PAAA+ VQLA   NAL
Sbjct: 241  DSLEEFGDIVLRANPNGSTVRLADVARLEVGGLAYSFSTRLDGRPAAAVAVQLAPSGNAL 300

Query: 301  NVGKAVKAKLKEMEPFYPTEMQLKNVIAYDTTPFVSLSIEEVVKALGEAIVLVVLIMFLF 360
               +AVKA++ E+  F+P  ++ +  ++YD TP ++ S+++V+  L EA+VLV L+MFLF
Sbjct: 301  ATSEAVKARMAELAAFFPPGVKYE--VSYDVTPVIAASVKKVLLTLAEAVVLVFLVMFLF 358

Query: 361  LQSLRATLIPAITVPVVLLGTFGVLALFGYSINTLTMFAMVLAIGLLVDDAIVVVENVER 420
            LQ++R T+IP I VP+ LLGT  VL   G+SIN LTMF MVLAIG+LVDDAIVVVENVER
Sbjct: 359  LQNIRYTMIPTIVVPIALLGTCAVLLGLGFSINVLTMFGMVLAIGILVDDAIVVVENVER 418

Query: 421  LMGE-GLSPVAATRQSMREISGALVGITLVLSAVFIPMAFFGGSTGIIYRQFSVTIVSAM 479
            +M E GLSP AAT ++M +I+GA++GITLVL AVF+PMAFF GS GI+Y+QFS  +V ++
Sbjct: 419  IMSEEGLSPRAATEKAMEQITGAVIGITLVLMAVFVPMAFFPGSVGIMYQQFSAAMVVSI 478

Query: 480  VLSVLVAMTLTPALCATLLKARNGKGHG-AQHGFFGWFNRTFERASAGYERWVGVVLRRW 538
              S  +A++LTPALCATLLK    KGHG A  GFFGWFNR  +RA+  Y      ++ R 
Sbjct: 479  GFSAFLALSLTPALCATLLKPVE-KGHGHATRGFFGWFNRRLDRATRSYGNATRWMVARG 537

Query: 539  GRSLLLYGLVLVVMAVGYVSLATSFLPDEDQGILLAQIQLPVGATDSRTQAVIKQFEDYI 598
            GR +LLY ++L V++  +  L   F+P +DQG ++  +  P  A+ +RT  V++  E  +
Sbjct: 538  GRFMLLYVVLLAVLSFAFWRLPGGFVPIDDQGFVMVDVLAPSDASANRTADVVRSVEKTL 597

Query: 599  LQQPEVEAMISISGLGMGGNSQNTARAFIRLKDWSERGGSGQGAAAIAQRATLALSSIGD 658
               P ++ +  I+G    G   NTA+AF+ LKDWSER  S + A A+  R     + I D
Sbjct: 598  AATPGIDKVTFITGFSFFGQGANTAQAFVSLKDWSERS-SNESADALIARLNPEFAKIRD 656

Query: 659  ADAFVMQPPTVRGLGQSSGFDLQLKDLGGLGHDALVAAREQFLELARKDARLLGVRSNGL 718
            AD  V+ PP +  LG +SGF  +L+D    G+DAL+ A+++ L  A +   L  V   GL
Sbjct: 657  ADVSVLAPPPIDNLGTTSGFSFRLQDRSQRGYDALMVAKDELLAAAARSPVLSSVTVEGL 716

Query: 719  DDAPQLKVSIDDRKAGALSLSTSDINSTLATALGGTYVNDFLNQGRVKKVYVQGQASSRM 778
              APQ+++ ID RKA AL ++ + IN  L+T LG +Y+NDFLN GR+++V VQ     R+
Sbjct: 717  PPAPQVRLDIDRRKAAALGVTFAAINGALSTNLGSSYINDFLNLGRMQRVVVQANEDKRV 776

Query: 779  QAADLDHWFVRNSNNEMVPFSSFASSTWGYGSPLLERYNGNASLEIVGDPAPGVSSGDAM 838
            +  DL  + VRN+  EMVPFSSFA   W  G   +  ++G  S+ + G+PAPG SSGDA+
Sbjct: 777  KPEDLLSYSVRNNAGEMVPFSSFARVAWVVGPTQVVGFDGYPSVRLTGNPAPGYSSGDAI 836

Query: 839  AAVEAIVRQLPQGIGYEWTGQSYQLRLSGSQAPLLYGISVLFVFLCLAALYESWSVPFSV 898
            A +E ++R LP G GY WTGQS Q +L+GSQA  L G+S+LFVFLCLAALYESWS+PF+V
Sbjct: 837  AEMERLMRTLPGGFGYAWTGQSLQEKLAGSQAVFLLGLSILFVFLCLAALYESWSIPFAV 896

Query: 899  ILVVPLGVIGAVLATRVAGLSNDVYFQVGLLTTVGLAAKNAILIVEFAKHLQEQGSSVID 958
            +L VPLG++G+V A  + GL NDVY  VG++T +GL+AKNAILI+EFAK L+  G+ +++
Sbjct: 897  MLAVPLGLVGSVAAAMLRGLPNDVYLTVGIVTIIGLSAKNAILIIEFAKDLRAHGTPLVE 956

Query: 959  ATLVAVRQRLRPILMTSLAFMFGVLPLALSTGAGSAGRQAIGTGVLGGMFSATVLGIFFV 1018
            AT+ A   R RPI+MTSLAF+ GV+PL +++GA +A +QA+GTGVLGGM +ATVL +F+V
Sbjct: 957  ATITAAELRFRPIIMTSLAFILGVVPLVIASGASAASQQALGTGVLGGMITATVLAVFWV 1016

Query: 1019 PLFFVLIRGRFGRVRSANQSAPTG 1042
            P+FFV++   F   R+A + A TG
Sbjct: 1017 PVFFVVVMRFFAGRRTAPE-ADTG 1039