Pairwise Alignments

Query, 463 a.a., transporter from Pseudomonas simiae WCS417

Subject, 474 a.a., RND efflux system, outer membrane lipoprotein CmeC from Pseudomonas fluorescens FW300-N2E2

 Score =  419 bits (1078), Expect = e-122
 Identities = 226/466 (48%), Positives = 319/466 (68%), Gaps = 18/466 (3%)

Query: 8   LAAMALGGCVNLAPQYERPEAPVSEQWLPAANLPKG----------KVGADIKWQQFFTD 57
           + A  L GC +L P+Y+RP+APV      AA+ P+G          +   +  W++FF D
Sbjct: 10  ITAAVLSGC-SLIPEYQRPQAPV------AAHYPQGPAYQAANAADQAAVEQGWREFFHD 62

Query: 58  RRLAQLQQLALANNRDLRLASLNVEKAQAQYRIKRADLFPTVDAGVSGTHSRTPGSLSNT 117
             L +L Q AL NNRDL++A+LNVE  +AQYRI+RADLFP + A  SGT  R P + S  
Sbjct: 63  PALQRLIQTALINNRDLKVAALNVEAYRAQYRIQRADLFPAIGANASGTRQRLPSAQSQP 122

Query: 118 GTAVTTHDYSAQLGLSSYELDVFGRVRNLRDEALEDYLALTETRRSTQISLVAEVATAWL 177
           G    +  Y   LG+SSYELD+FGR+ +L  +ALE YL+  + RRS QIS+V+ VA A+L
Sbjct: 123 GQPSISSQYDVNLGISSYELDLFGRIASLSQQALETYLSTAQARRSAQISIVSSVANAYL 182

Query: 178 TLAADNERLLLAQETLTSQLATYDLTQRSYALGGSSALSVAQAQTTVESARGDVASYESQ 237
           T  AD E L L + TL +   +  LT RS  +G  SAL +AQA+T+V+ AR  +A+Y+ +
Sbjct: 183 TWQADRELLKLTENTLGTYEESLRLTTRSNQVGVVSALDLAQARTSVQGARASLANYQRR 242

Query: 238 ILQDRNALRLLVGSDLPEALLPGTRLESAAVLVDIPAGLPSSLLQQRPDVLSAEHTLKSA 297
           + +D NAL LL+G+ LP A LP  +     +L ++PAGLPS LL +RPD+L+AEH+L +A
Sbjct: 243 VAEDENALVLLLGTGLP-ADLPEPQSLDGDLLANVPAGLPSDLLVRRPDILAAEHSLLAA 301

Query: 298 NIDIGAARAAFYPSISLTANAGSSSSALAGLFKSGSGAWTFAPSISVPIFDGGSNRATLD 357
           N +IGAARAAF+PSISLTANAG+SS+ L GLFKS SG+W F+P+IS+PIF+ G+ RA+LD
Sbjct: 302 NANIGAARAAFFPSISLTANAGTSSANLDGLFKSSSGSWAFSPTISLPIFNAGALRASLD 361

Query: 358 SAKVEREIQLQTYQQTLQTAFREVADALAVRSTLDRRIAAQQALTDASRKSFELSDALYR 417
            +K++++I +  Y++ +QTAF+EV+D L  R T   ++ AQ+ L +AS+  ++L++  YR
Sbjct: 362 YSKIQKDIGVANYEKAIQTAFQEVSDGLTARKTYVDQLQAQKDLVNASQDYYQLAERRYR 421

Query: 418 GGSQSYLEALDAQRSLYSAQQDLITLRLTEQSNRITLYKVLGGGWN 463
            G  S+L  LDAQRSL+S+QQ LI  RL +    ++LY+ LGGGWN
Sbjct: 422 IGVDSHLTFLDAQRSLFSSQQGLINDRLAQLQAEVSLYRALGGGWN 467