Pairwise Alignments

Query, 319 a.a., ABC transporter permease from Pseudomonas simiae WCS417

Subject, 266 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  180 bits (457), Expect = 3e-50
 Identities = 97/204 (47%), Positives = 133/204 (65%)

Query: 112 WALGPLMWGLWTTLWLSVVSGILGLIIGLATGLCRLSSNPTLRDLSTIYVELVRGTPLLV 171
           W  G L+ GL  TL L+ +S I  L +GL T L R S +   R L T Y+ +VR TPLLV
Sbjct: 56  WWAGDLLHGLLVTLQLTGISLIFTLALGLTTALLRQSRSLVGRALGTGYIAVVRNTPLLV 115

Query: 172 QIFIFYFFIGTVLNLSREFAGIAALSLFTGAYVAEIVRAGVQSITRGQNEAARSLGLSAS 231
           QI++ YF  G V+ L R    + AL+LF GAY AE+ R G+ SI +GQ EAARSLGLS  
Sbjct: 116 QIYLLYFVFGPVIGLDRFATAVLALALFQGAYTAEVFRGGLNSIPQGQYEAARSLGLSRF 175

Query: 232 QSMRHVVLPQAFKRVLPPLAGQFISLVKDTSLVSVIAITELLKSGREVITTSFSPFEILF 291
            +   V+LPQ  +R LPPL  + +SL+K++S+VSV+AI +L   GR +++ +  PFEI F
Sbjct: 176 FTFYDVILPQLLQRTLPPLTNEMVSLIKNSSIVSVMAIFDLTTQGRNIVSETAMPFEIWF 235

Query: 292 CVAGLYLLINLPLSKMASRLERRL 315
            VA +YLL+ L LS +++ LE +L
Sbjct: 236 SVAAIYLLLTLTLSALSAWLEHKL 259



 Score = 32.3 bits (72), Expect = 1e-05
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 12 LLTVVVLVGLAGALYYATSLMSYEWRWNRVPQY 44
          L  ++V  GL   L      M Y W+W+RVP+Y
Sbjct: 15 LQMMLVFAGLVWLLDSGAEAMGYTWQWHRVPEY 47