Pairwise Alignments

Query, 319 a.a., ABC transporter permease from Pseudomonas simiae WCS417

Subject, 357 a.a., binding-protein-dependent transport systems inner membrane component (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  159 bits (401), Expect = 1e-43
 Identities = 98/258 (37%), Positives = 135/258 (52%), Gaps = 43/258 (16%)

Query: 104 DVVGVTRHWALGPLMWGLWTTLWLSVVSGILGLIIGLATGLCRLSSNPTLRDLSTIYVEL 163
           D  G    W  G L  GL  TL L + S +L L IG   GL R S     R ++  YVE 
Sbjct: 99  DTQGAAGGWVPGTLTQGLLVTLRLGLWSTLLALCIGTGMGLLRASPRLFRRMVARTYVEG 158

Query: 164 VRGTPLLVQIFIFYFFI-----------------GTVLNLSREF---------------- 190
           VR  P LV +FIF+FF+                 G    LS +                 
Sbjct: 159 VRNLPPLVLVFIFHFFVSSQFAPLLAGLFAPVADGVAALLSPQLYLPVQDWLARASALLL 218

Query: 191 ----------AGIAALSLFTGAYVAEIVRAGVQSITRGQNEAARSLGLSASQSMRHVVLP 240
                     +G+  L L+ GAY+ EIVRAG++ + RGQ EA+ S GL+  Q +RHV+LP
Sbjct: 219 APPGQLPVFLSGVVVLGLYEGAYITEIVRAGLEGVERGQWEASASTGLTRRQQLRHVILP 278

Query: 241 QAFKRVLPPLAGQFISLVKDTSLVSVIAITELLKSGREVITTSFSPFEILFCVAGLYLLI 300
           QAF+ ++PPLAGQFIS +KD++++SVI+I EL   G E++  ++  FEI   VA LYL++
Sbjct: 279 QAFRLIVPPLAGQFISTIKDSAILSVISIRELTFQGMELMAATYLTFEIWLTVAALYLML 338

Query: 301 NLPLSKMASRLERRLAQS 318
               S  A  +ERRL ++
Sbjct: 339 TFSCSLAARHVERRLRRA 356