Pairwise Alignments

Query, 319 a.a., ABC transporter permease from Pseudomonas simiae WCS417

Subject, 295 a.a., amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  164 bits (414), Expect = 3e-45
 Identities = 92/232 (39%), Positives = 134/232 (57%), Gaps = 29/232 (12%)

Query: 112 WALGPLMWGLWTTLWLSVVSGILGLIIGLATGLCRLSSNPTLRDLSTIYVELVRGTPLLV 171
           W  GPL  GL  T+ LS+ + +  L++G   GL R       R L+  YV+ VR  P LV
Sbjct: 59  WHAGPLARGLAGTVRLSLWAMLAALLLGTVAGLLRTRRRLLARLLAGTYVDSVRNLPALV 118

Query: 172 QIFIFYFFIGTVL-----------------------------NLSREFAGIAALSLFTGA 202
            IF+ YFFI +++                              LS   + +  L+++ GA
Sbjct: 119 LIFVMYFFISSLVLPALGLEESVRGLPPGGRAVVGWLFAPVEQLSAFLSAVVTLAIYEGA 178

Query: 203 YVAEIVRAGVQSITRGQNEAARSLGLSASQSMRHVVLPQAFKRVLPPLAGQFISLVKDTS 262
           Y++EIVRAG++S+ RGQ +A+ S GL   Q MRHV+LPQA +  +PPLAGQFIS++KD++
Sbjct: 179 YISEIVRAGIESVPRGQWDASSSFGLGPVQQMRHVILPQALRHAVPPLAGQFISIIKDSA 238

Query: 263 LVSVIAITELLKSGREVITTSFSPFEILFCVAGLYLLINLPLSKMASRLERR 314
           +VSVI++ EL   G E++  ++  FEI   +A LYL++ L  S +A RLERR
Sbjct: 239 IVSVISVPELTFQGMELMAATYQTFEIWTTIALLYLVLTLGCSLVAERLERR 290