Pairwise Alignments

Query, 788 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 604 a.a., Outer membrane protein from Pseudomonas stutzeri RCH2

 Score = 54.3 bits (129), Expect = 2e-11
 Identities = 38/142 (26%), Positives = 66/142 (46%), Gaps = 37/142 (26%)

Query: 644 YTAGGEGTVRGFESGTLGPRSTPATGTYASAGQAYYSDRDTEALGGNILITGGAEYLFPV 703
           Y AGG+ +VRG++  +L P ++                 D + +GG       AEY + +
Sbjct: 497 YFAGGDQSVRGYDYQSLSPTNS-----------------DGDKIGGRYQFAVSAEYQYSI 539

Query: 704 PFIKDNKSVRTSLFWDVGSVYSDKCYLSTTQGCGGVDLSQMASSVGVGVTWYSPLGPLSV 763
                 +  R + F D G+ ++             +++  + S+VGVGV W SP+GP+ V
Sbjct: 540 A-----EKWRVATFVDQGNAFNS------------LEIPTLKSAVGVGVRWVSPVGPIRV 582

Query: 764 NLAYPIRTPENADKQVFQFSMG 785
           +LA+P+   ++       FSMG
Sbjct: 583 DLAHPL---DSEGGVRLHFSMG 601



 Score = 37.7 bits (86), Expect = 2e-06
 Identities = 24/110 (21%), Positives = 48/110 (43%)

Query: 328 VHEADHTVDITFSVEPGKRAYVNRINFRGNTKTDDKVLRREMRQMEGGWASTYLIDQSKV 387
           V   ++T D+    + G R  +  + F G+   DD +LRR +         + LI +   
Sbjct: 198 VDPRENTADVELVFDSGPRYRLGDVRFEGDAPFDDDLLRRMVPFDADTPYDSELIAELSQ 257

Query: 388 RLERLGYFKEVNVETPAVTGLDDQLDVNYAVQEQASGSITASVGFAQSSG 437
            L+  GYF+ V V+    +  + ++ V  A+  +   +    +G++   G
Sbjct: 258 ALQSSGYFEGVRVDANPTSASEQRIPVAVALTTRKPRTFGLGLGYSTDVG 307



 Score = 27.3 bits (59), Expect = 0.002
 Identities = 29/177 (16%), Positives = 72/177 (40%), Gaps = 13/177 (7%)

Query: 134 RNELQRQYVAQGRYSASVDTEVVPQPRNRVGLKIKIDEGEVASIQHINVV--GNTVFADA 191
           + + ++   A G Y + + T+V  +  +   L +++  GE   +++I V   G       
Sbjct: 94  QRQAEKALQALGYYRSRIRTDV--REGDEPTLVLRVQTGEPVRLRNITVRLDGPAAEFSG 151

Query: 192 ALLDQFTLKTSNWLSFFRNDDKYAREKLSGDLERLRSFYLDRGYINMDIASTQVSMTPDK 251
             + Q TL+  + L+  R +D   +++      R        GY +      ++++ P +
Sbjct: 152 FRVAQRTLRQGDVLNHGRYED--VKQQFLNQASRY-------GYFDGRFTRQRLAVDPRE 202

Query: 252 KHVYITVNIQEGQKYTVRDVKLSGELKVPQDQVQALLLVKKGQVFSRKLMTTTSDLI 308
               + +    G +Y + DV+  G+     D ++ ++       +  +L+   S  +
Sbjct: 203 NTADVELVFDSGPRYRLGDVRFEGDAPFDDDLLRRMVPFDADTPYDSELIAELSQAL 259