Pairwise Alignments

Query, 788 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 803 a.a., outer membrane protein assembly factor BamA from Vibrio cholerae E7946 ATCC 55056

 Score =  540 bits (1392), Expect = e-158
 Identities = 300/810 (37%), Positives = 457/810 (56%), Gaps = 29/810 (3%)

Query: 1   MNFSRLLCSVALLLNASLALAQGFKISDIRINGLQRVSAGSVFGALPLNVGDEADDRRLV 60
           M   ++L +  L  + S   A+ F + DI+I+GLQRV+ G+    +P+ VGD  D + + 
Sbjct: 1   MAMKQILLATLLATSVSANGAEKFVVQDIQIDGLQRVALGAALLKMPVRVGDSVDSQDVA 60

Query: 61  DSTRALFKTGYFQDIQLSREGDVLIINVVERPSVASIEFEGNKAIATDDLMKGMKQSGLS 120
           +  +AL+ +G F+D+++ R+G+ L++ V ERP++AS+ F GNKAI  + L + ++ S + 
Sbjct: 61  NIIKALYSSGNFEDVKVLRDGNTLMVQVKERPTIASVSFSGNKAIKEEQLKQNLEASSIR 120

Query: 121 ESEIFQRATLEGLRNELQRQYVAQGRYSASVDTEVVPQPRNRVGLKIKIDEGEVASIQHI 180
             E   R TL  +   L+  Y + G+Y+A+V   V P PRNR  LK    EG  A IQ I
Sbjct: 121 VGEALDRTTLSNIEKGLEDFYYSVGKYNATVKAVVTPLPRNRADLKFVFTEGVSAKIQQI 180

Query: 181 NVVGNTVFADAALLDQFTLKTS-NWLSFFRNDDKYAREKLSGDLERLRSFYLDRGYINMD 239
           N +GN VF+D  LL +F L     W +F   DDKY ++ L+GD+E LR++YLDRGY+   
Sbjct: 181 NFIGNQVFSDEELLSRFNLNVDVAWWNFLA-DDKYKKQVLAGDIEALRTYYLDRGYLKFQ 239

Query: 240 IASTQVSMTPDKKHVYITVNIQEGQKYTVRDVKLSGELKVPQDQVQALLLVKKGQVFSRK 299
           + STQV+++PDKK VYIT+N+ EG+ YTV  V+  GEL   + +  +L+  + G+ ++  
Sbjct: 240 VDSTQVAISPDKKGVYITLNLNEGEPYTVSKVQFRGELMGKEAEFTSLIPFEIGETYNGS 299

Query: 300 LMTTTSDLITRRLGNDGYTFANVSGTPQVHEADHTVDITFSVEPGKRAYVNRINFRGNTK 359
            +T   + + + LG  GY +  V   P+  +    V +   VE GKR YV  I F GN  
Sbjct: 300 AVTRLEESVKKVLGESGYAYPQVRTIPEFDDEKQQVSLVVHVEAGKRVYVRDIRFVGNNS 359

Query: 360 TDDKVLRREMRQMEGGWASTYLIDQSKVRLERLGYFKEVNVETPAVTGLDDQLDVNYAVQ 419
           T D+VLRREMRQMEG W ++  I+  K RL RLG+F+ V V+T  V G +DQ+D+ Y+V+
Sbjct: 360 TRDEVLRREMRQMEGSWLNSKDIETGKTRLNRLGFFETVEVQTVRVPGSEDQVDLVYSVK 419

Query: 420 EQASGSITASVGFAQSSGLILGGSITQNNFLGTGNSASLGLTRSSYQSKYNIGFTDPYFT 479
           E  SG++   VG+   SG+     + Q+NFLG+GN   +    + YQ    + + DPY+ 
Sbjct: 420 EANSGNVNFGVGYGTESGVSFQVGLQQDNFLGSGNRVGVNAMINDYQKNLTLEYRDPYWN 479

Query: 480 RDGVSLGYNAFYNKTDYNKYYDDGVSYYAINSYGLGASLGYPINETSRLSFGLTAQHDSI 539
            DGVSLG   FYN+ + +   + G+  Y   SYG   + G+P +E +R  FG+   H+ I
Sbjct: 480 LDGVSLGGKVFYNQFEAS---EAGIVDYTNESYGTSLTWGFPFDELNRFEFGIGYTHNKI 536

Query: 540 EPGT-YSADEIY-----DFIEREGKQFT-NFKANLGWSESTLNKGVLATRGHAQNLNLTV 592
              T Y   E +       I+  G   T +F  NL W+ + LN     T G+ Q     +
Sbjct: 537 GNLTPYLQVENFLAAQASNIDSGGNLLTDDFDINLSWTRNNLNNSYFPTAGNHQRAFYKM 596

Query: 593 TVPGSDLSFYKIDYTGQTFLPVS--NNTALRLHTKLGYGNGYGSTDG----LPFYESYTA 646
           TVPGSD  ++K+ Y  + + P++  +   L L  +LGYGNGYG TDG     PFYE++ A
Sbjct: 597 TVPGSDAQYFKLQYDVRQYFPLTKKHEFTLLLRGRLGYGNGYGQTDGKDNLFPFYENFYA 656

Query: 647 GGEGTVRGFESGTLGPRSTPATGTYASAGQAYYSDRDTEALGGNILITGGAEYLFPVPFI 706
           GG  ++RGF S + GP++     + ++ G    +D   +++GGN +     E + P PF 
Sbjct: 657 GGFTSLRGFGSNSAGPKAVYRDYSGSNNGSDTATD---DSVGGNAIALASVELIVPTPFA 713

Query: 707 KD--NKSVRTSLFWDVGSV------YSDKCYLSTTQGCGGVDLSQMASSVGVGVTWYSPL 758
            +     +RTS+F+D+ SV      Y  K            D +   SS GV + W SP+
Sbjct: 714 SEEARNQIRTSIFYDMASVWDTEFDYRGKADYGNQYYYDYSDPTNYRSSYGVALQWVSPM 773

Query: 759 GPLSVNLAYPIRTPENADKQVFQFSMGQTF 788
           GPL  +LA PI+  E  D++ F F++G+TF
Sbjct: 774 GPLVFSLAKPIKKYEGDDEEFFTFTIGRTF 803