Pairwise Alignments

Query, 788 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 721 a.a., outer envelope membrane protein from Synechococcus elongatus PCC 7942

 Score = 71.6 bits (174), Expect = 1e-16
 Identities = 125/592 (21%), Positives = 219/592 (36%), Gaps = 87/592 (14%)

Query: 243 TQVSMTPDKKHVYITVNIQEGQKYTVRDVKLSGELKVPQDQVQALLLVKKGQVFSRKLMT 302
           + V + P+   + + +         +  ++L G   +P   +Q       G++ + + + 
Sbjct: 171 SNVQVLPEDTPLGVQITFVVEPNPVLSKIELDGARVLPDSVIQETFKDDYGKILNLQTLQ 230

Query: 303 TTSDLITRRLGNDGYTFANV--------SGTPQVHEADHTVD---ITFSVEPGKRAYVNR 351
                +      +GY  A V        +G   +  A+  +    + F    G+      
Sbjct: 231 ARIRTLNTWYRENGYVLAQVVDASRISPNGEVTLRVAEGVISELIVRFQNAEGRSTDEEG 290

Query: 352 INFRGNTKTDDKVLRREMRQMEGGWASTYLIDQSKVRLERLGYFKEVNVETPAVTGLDDQ 411
              RG  KT   ++ RE    EG   +    +    R+  LG F +V +          +
Sbjct: 291 NPIRG--KTRPFIVTREYSFKEGDVFNRPQAEAGLRRIFGLGLFSDVRLNLEPDPRDPTK 348

Query: 412 LDVNYAVQEQASGSITASVGFAQSSGLILGGSITQNNFLGTGNSASLGLTRSSYQSKYNI 471
           + V   VQE ++G+ +A VGF+ +SGL     + + NF G        L+    Q+ ++I
Sbjct: 349 VVVVTNVQESSTGNFSAGVGFSDASGLFGTIGLQEQNFGGNNQKLGFQLSVGQRQALFDI 408

Query: 472 GFTDPYFTRDGVSLGY--NAFYNKTDYNKYYDDGVSYYAINSYGL-----GASLGY---- 520
            F+DP+   D     Y  N F +     ++ +  +     N   +     G  + +    
Sbjct: 409 SFSDPWIAGDPFRSSYSVNVFRSAELALQFTNGPIDVNLPNGNSIITQRTGTQILFTRPQ 468

Query: 521 --PINETSRLSFGLTAQH----DSIEPGTYSADEIYDFIERE-GKQFTNFKANLGWSEST 573
             P        FG  + +      I    ++ DE  + +    G Q T F    G    T
Sbjct: 469 ADPYTRPEWTLFGGVSFNVVDITDINGNAFAQDEFGNPLTASGGSQDTLFGLIFGAVRDT 528

Query: 574 LNKGVLATRGHAQNLNLTVTVP-GSDLSFYKIDYTGQTF-LPV-----------SNNTAL 620
            +     TRG     N+   +P  ++  FY     G +F +P+            N TA 
Sbjct: 529 RDNVATPTRGSLFRFNVDQFLPITANGVFYNRIRAGYSFYVPIRLLRFQEGCRKDNPTAE 588

Query: 621 RLHTKLGYGNGYGSTDG-LPFYESYTAGGEGTVRGFESGTLGPRSTPATGTYASAGQAYY 679
                L +    G+  G LP YE++  GG  TVRG+E   L                   
Sbjct: 589 ECPQTLAFNIQAGTALGNLPPYEAFCIGGVNTVRGYEECGLA------------------ 630

Query: 680 SDRDTEALGGNILITGGAEYLFPVPFIKDNKSVRTSLFWDVG-SVYSDKCYLSTTQGCGG 738
                    G   +   AEY FP+     ++ +  +LF D G S+ SD    S   G   
Sbjct: 631 --------SGRSFVVASAEYRFPI----ISQFLGGALFADAGTSLGSD----SAVIGAPA 674

Query: 739 VDLSQMASSV--GVGVTWYSPLGPLSVNLAYPIRTPENADKQVFQFSMGQTF 788
           V   +    V  G GV   +P+GP+ ++L +   TP+  ++   QF++G+ F
Sbjct: 675 VIRGKPGGGVGYGFGVRIATPVGPVRLDLGF---TPDQGNR--IQFAIGEKF 721



 Score = 35.8 bits (81), Expect = 8e-06
 Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 9/141 (6%)

Query: 41  SVFGALPLNVGDEADDRRLVDSTRALFKTGYFQDIQLSREG---DVLIINVVE-RPSVAS 96
           +++GA+    G  +   +L +   A+F TG F ++Q+  E     V I  VVE  P ++ 
Sbjct: 139 AIYGAIRTQAGATSTRTQLQNDVNAIFGTGLFSNVQVLPEDTPLGVQITFVVEPNPVLSK 198

Query: 97  IEFEGNKAIATDDLMKGMKQSGLSESEIFQRATLEGLRNELQRQYVAQGRYSASVDTEVV 156
           IE +G + +    + +  K       +I    TL+     L   Y   G   A V     
Sbjct: 199 IELDGARVLPDSVIQETFKD---DYGKILNLQTLQARIRTLNTWYRENGYVLAQVVDASR 255

Query: 157 PQPRNRVGLKIKIDEGEVASI 177
             P   V L++   EG ++ +
Sbjct: 256 ISPNGEVTLRVA--EGVISEL 274