Pairwise Alignments

Query, 788 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 618 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 74.7 bits (182), Expect = 1e-17
 Identities = 124/571 (21%), Positives = 218/571 (38%), Gaps = 73/571 (12%)

Query: 234 GYINMDIASTQVSMTPDKKHVYITVNIQEGQKYTVRDVKLSGELKVPQ--DQVQALLLVK 291
           GY + ++    V        + +TV   E  K    D+  SGE+   +  D+  A + +K
Sbjct: 82  GYYHGEVEDHLVEKDKGPWELTLTVKAGEPVKIQWVDINFSGEMLDDRAFDKWLADVNIK 141

Query: 292 KGQVFSRKLMTTT-SDLITRRLGNDGYTFANVSGTPQVHEADHTVDITFSVEPGKRAYVN 350
            G   +  + +   S L+T  L    +         +++   +T  I+     G R +  
Sbjct: 142 PGDTLNHGMYSDVKSQLVTLALARGYFDGEFTESQIKINRDLNTAQISLHFNSGARYHFG 201

Query: 351 RINFRGNTKTDDKVLRREMRQMEGGWASTYLIDQSKVRLERLGYFKEVNVETPAVTGLDD 410
           +++F G+T   D +L + +   E    ST  +     +L   GYF  + V        D+
Sbjct: 202 QVSFEGHTLEPD-ILTKLIPFKEDASYSTRRVSALNRQLLDTGYFSNIKVIPQLDLAKDN 260

Query: 411 QLDVNYAVQEQASGSITASVG--FAQSSGLILGGSIT------QNNFLGTGNSASLGLT- 461
           QL V   +  +AS SI   +G    QSS       +       Q N  G     SL  + 
Sbjct: 261 QLPVKVELTNKASHSIELGLGGDIGQSSDKTFDPRVRVTWRTPQINKYGHSQETSLEWSP 320

Query: 462 -RSSYQSKYNIGFTDPYFTRDGVSLGYNAFYNKTDYNKYYDDGVSYYAINSYGLGASLGY 520
            R  + + Y I  T P   +  + LG     +K    + Y+     +  N+  L      
Sbjct: 321 DRPKFLTTYTIPLTHPLDDQLKIRLGLQR--DKYGVTQIYEPENRDFR-NTGQL------ 371

Query: 521 PINETSRLSFGLTAQH--DSIEPGTYSADEIYDFIEREGKQFTN--FKANLGWSESTLNK 576
              E+++   GL  Q   D+    +YS D I +   +    +    + A + +S++T   
Sbjct: 372 ---ESTKYLLGLLRQQRLDNQWLMSYSLDAIREEYTQSDVDYNPSFYLAGINFSKTTRGD 428

Query: 577 GVLATR-GHAQNLNLTVTVP--GSDLSFYKIDYTGQTFLPVSNNTALRLHTKLGYGNGYG 633
             L  + G+ Q  +L    P  GS+    ++    +      +N   R+  ++       
Sbjct: 429 NSLDPKSGYRQTYSLDYADPYLGSETRLARLQAKFKWIDTFFDNH--RIVARMDLAANLA 486

Query: 634 STDGL---PFYESYTAGGEGTVRGFESGTLGPRSTPATGTYASAGQAYYSDRD----TEA 686
           + D L   P    Y AGG+ T+RG+    LGP                Y D D     E 
Sbjct: 487 NEDELALIPPSLRYFAGGDQTIRGYGYQELGPYLD-------------YIDADGNVNREV 533

Query: 687 LGGNILITGGAEYLFPVPFIKDNKSVRTSLFWDVGSVYSDKCYLSTTQGCGGVDLSQMAS 746
           +GG  L+ G  EY + V       + R + F D G+ + +  +             +   
Sbjct: 534 IGGRYLMVGSVEYQYYV-----TPTWRVATFVDAGNAFDNNQF-------------EPVV 575

Query: 747 SVGVGVTWYSPLGPLSVNLAYPIRTPENADK 777
           SVG G+ W SP+GP+ ++L   ++  +  D+
Sbjct: 576 SVGGGIHWISPIGPIKLDLGVGLKETDTIDR 606



 Score = 51.2 bits (121), Expect = 2e-10
 Identities = 62/321 (19%), Positives = 129/321 (40%), Gaps = 38/321 (11%)

Query: 119 LSESEIFQRATLEGLRNELQRQYVAQGRYSASVDTEVVPQPRNRVGLKIKIDEGEVASIQ 178
           + +SE+ +RA L  + + +     + G Y   V+  +V + +    L + +  GE   IQ
Sbjct: 56  MPDSEVQRRAFLFNVEDNVTTALQSMGYYHGEVEDHLVEKDKGPWELTLTVKAGEPVKIQ 115

Query: 179 HINVVGNTVFADAALLDQFTLKTSNWLSFFRNDDKYAREKLSGDLERLRSFYLDRGYINM 238
            +++  +    D    D++    +       N   Y+  K      +L +  L RGY + 
Sbjct: 116 WVDINFSGEMLDDRAFDKWLADVNIKPGDTLNHGMYSDVK-----SQLVTLALARGYFDG 170

Query: 239 DIASTQVSMTPDKKHVYITVNIQEGQKYTVRDVKLSGELKVPQDQVQALLLVKKGQVFSR 298
           +   +Q+ +  D     I+++   G +Y    V   G    P D +  L+  K+   +S 
Sbjct: 171 EFTESQIKINRDLNTAQISLHFNSGARYHFGQVSFEGHTLEP-DILTKLIPFKEDASYST 229

Query: 299 KLMTTTSDLITRRLGNDGYTFANVSGTPQVHEA-DHTVDITFSVEPGKRAYVNRINFRGN 357
           + ++     + R+L + GY F+N+   PQ+  A D+ + +   +   K ++   +   G+
Sbjct: 230 RRVSA----LNRQLLDTGY-FSNIKVIPQLDLAKDNQLPVKVEL-TNKASHSIELGLGGD 283

Query: 358 T-KTDDKVLRREMRQMEGGWASTYLIDQSKVRLERLGYFKEVNVE-------------TP 403
             ++ DK     +R           +     ++ + G+ +E ++E              P
Sbjct: 284 IGQSSDKTFDPRVR-----------VTWRTPQINKYGHSQETSLEWSPDRPKFLTTYTIP 332

Query: 404 AVTGLDDQLDVNYAVQEQASG 424
               LDDQL +   +Q    G
Sbjct: 333 LTHPLDDQLKIRLGLQRDKYG 353