Pairwise Alignments

Query, 563 a.a., general secretion pathway protein GspE from Pseudomonas simiae WCS417

Subject, 503 a.a., type II secretion system protein GspE from Vibrio cholerae E7946 ATCC 55056

 Score =  388 bits (996), Expect = e-112
 Identities = 206/435 (47%), Positives = 299/435 (68%), Gaps = 20/435 (4%)

Query: 141 EVDTLIERYYGQGRSAMGTLIENL----DEQGGAEEDI---EHLKDMASEAPVIRLVNLI 193
           E ++ + + Y +  S    L+E++    D+     E++   E L +   +AP+I+L+N +
Sbjct: 71  EFESKLTQVYQRDSSEARQLMEDIGADSDDFFSLAEELPQNEDLLESEDDAPIIKLINAM 130

Query: 194 LQRAVEQRASDIHIEPFENQLKVRYRIDGVLHDAEAPPASSSAAVISRVKIMARLDIAER 253
           L  A+++ ASDIHIE FE  L +R+R+DGVL +  AP    S+ ++SRVK+MA+LDIAE+
Sbjct: 131 LGEAIKEGASDIHIETFEKTLSIRFRVDGVLREVLAPSRKLSSLLVSRVKVMAKLDIAEK 190

Query: 254 RLPQDGRIMLRIQGKELDLRVSTVPTSFGESVVLRLLDRQTVQFDFPSLGFDGQRLASFL 313
           R+PQDGRI LRI G+ +D+RVST+P+S GE VV+RLLD+   + D  SLG       +F 
Sbjct: 191 RVPQDGRISLRIGGRAVDVRVSTMPSSHGERVVMRLLDKNATRLDLHSLGMTAHNHDNFR 250

Query: 314 DLLERPHGILLVTGPTGSGKTTTLYTALSRLNTTERKIITVEDPVEYQLEGINQIQVKPA 373
            L++RPHGI+LVTGPTGSGK+TTLY  L  LN++ER I+TVEDP+E+ ++GI Q QV P 
Sbjct: 251 RLIKRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPR 310

Query: 374 IGLDFAGALRSIVRQDPDVIMIGEIRDLETCRIAIQSSLTGHLVLSTLHTNSAAASITRL 433
           + + FA  LR+I+RQDPDV+M+GEIRDLET +IA+Q+SLTGHLV+STLHTN+A  ++TRL
Sbjct: 311 VDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRL 370

Query: 434 MDMGVESYLIASTVSGILAQRLVRRLDPVTRVAFEAPPELIAEHGLDRLTEQRPILLYRG 493
            DMG+E +LI+S++ G+LAQRLVR L P  +  +EA  E   +  L    ++ P++LYR 
Sbjct: 371 RDMGIEPFLISSSLLGVLAQRLVRTLCPDCKEPYEADKE---QRKLFDSKKKEPLILYRA 427

Query: 494 ---------DYHGRSALTELLVMNDELRSLLMRHADAATLEQAARRAGLRTLYEEGLRQA 544
                     Y GR+ + ELL+++D L+ L+   A    +E+   RA   ++ ++GL + 
Sbjct: 428 TGCPKCNHKGYRGRTGIHELLLVDDALQELIHSEAGEQAMEKHI-RATTPSIRDDGLDKV 486

Query: 545 LAGITSLEEVLRVTR 559
             GITSLEEV+RVT+
Sbjct: 487 RQGITSLEEVMRVTK 501