Pairwise Alignments

Query, 563 a.a., general secretion pathway protein GspE from Pseudomonas simiae WCS417

Subject, 521 a.a., general secretion pathway protein E (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  380 bits (975), Expect = e-110
 Identities = 217/485 (44%), Positives = 306/485 (63%), Gaps = 19/485 (3%)

Query: 92  FMRHYQVVPMGWTQGGLRVLAANPAQLYPFQALAYACQVPVWLAIGPRNEVDTLIERYYG 151
           F   +QV+      G L +       L           V + L +   N+ +  + + Y 
Sbjct: 41  FAHRHQVILAYGDDGALNLFYTAHTPLAAMLEARRYSGVDLPLVLLEPNKFEVKLTQAYQ 100

Query: 152 QGRSAMGTLIENLDEQGG----AEE--DIEHLKDMASEAPVIRLVNLILQRAVEQRASDI 205
              S    L+E++  +      AEE    E L +   +AP+I+L+N +L  A+++ ASDI
Sbjct: 101 ANSSEAQQLMEDIGNEMDLFTLAEELPQTEDLLEGDDDAPIIKLINALLSEAIKEEASDI 160

Query: 206 HIEPFENQLKVRYRIDGVLHDAEAPPASSSAAVISRVKIMARLDIAERRLPQDGRIMLRI 265
           HIE +E QL VR+RIDGVL +   P    S+ ++SR+K+MARLDIAE+R+PQDGRI LRI
Sbjct: 161 HIETYEKQLVVRFRIDGVLKEVLKPNRKLSSLLVSRIKVMARLDIAEKRVPQDGRISLRI 220

Query: 266 QGKELDLRVSTVPTSFGESVVLRLLDRQTVQFDFPSLGFDGQRLASFLDLLERPHGILLV 325
            G+ +D+RVST+P+S GE VVLRLLD+     D   LG      A F +L+ RPHGI+LV
Sbjct: 221 AGRAVDVRVSTMPSSHGERVVLRLLDKNAGNLDLKQLGMTDSIRAKFDELIRRPHGIILV 280

Query: 326 TGPTGSGKTTTLYTALSRLNTTERKIITVEDPVEYQLEGINQIQVKPAIGLDFAGALRSI 385
           TGPTGSGK+TTLY  L+ +N+ +  I+TVEDP+EY+LEGI Q QV     + FA  LR+I
Sbjct: 281 TGPTGSGKSTTLYAGLTEINSKDTNILTVEDPIEYELEGIGQTQVNTKADMTFARGLRAI 340

Query: 386 VRQDPDVIMIGEIRDLETCRIAIQSSLTGHLVLSTLHTNSAAASITRLMDMGVESYLIAS 445
           +RQDPDV+MIGEIRDLET +IA+Q+SLTGHLV+STLHTN+A+ +ITRL DMGVE +L++S
Sbjct: 341 LRQDPDVVMIGEIRDLETAQIAVQASLTGHLVISTLHTNTASGAITRLQDMGVEPFLVSS 400

Query: 446 TVSGILAQRLVRRLDPVTRVAFEAPPELIAEHGLDRLTEQRPILLYRGD---------YH 496
           ++ G+LAQRL+R L P  +     P E   E  L  +T   P  +YR +         Y 
Sbjct: 401 SLLGVLAQRLIRTLCPKCKTE-HTPDE--RERELLGITADDPRHIYRANGCKACGGSGYR 457

Query: 497 GRSALTELLVMNDELRSLLMRHADAATLEQAARRAGLRTLYEEGLRQALAGITSLEEVLR 556
           GR+ + ELL+++D +R L+        +E+  R++ + ++  +G+ + L GIT+LEEVLR
Sbjct: 458 GRTGIHELLLVDDNVRELIHGGRGELAIEKYIRQS-VPSIRHDGMSKVLLGITTLEEVLR 516

Query: 557 VTRGE 561
           VTR E
Sbjct: 517 VTREE 521