Pairwise Alignments

Query, 398 a.a., general secretion pathway protein GspF from Pseudomonas simiae WCS417

Subject, 408 a.a., type IV pilin assembly protein PilC from Vibrio cholerae E7946 ATCC 55056

 Score =  197 bits (502), Expect = 3e-55
 Identities = 114/396 (28%), Positives = 211/396 (53%), Gaps = 5/396 (1%)

Query: 4   FKFRALDSQGVPQNGTLEAVDQVAAVAALHKRGLLLLQIEAAGSPLLRNPRGQLKGAALV 63
           ++++ ++S G   +G + A+ ++     L  + + + +++     LL     ++K   + 
Sbjct: 12  YRWKGINSNGKKVSGQMLAISEIEVRDKLKDQHIQIKKLKKGSVSLLARLTHRVKSKDIT 71

Query: 64  SFTQQLATLLGAGQPLERSLSLLLKQPGQPQVRALIGRIRDHVKAGKPLSAALEEEGGSF 123
             T+QLAT+L  G P+ ++L L+     + ++++++ +I   V+AG PLS A+      F
Sbjct: 72  ILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAMRTASAHF 131

Query: 124 SPLYLSMVRAGEAGGALENTLRQLSDYLERSERLRGEVINALIYPAFLVVGVLGSLALLL 183
             LY+ +V  GE  G L     +L+ Y E+SE+LR +VI ALIYP+ +V+  LG   L+L
Sbjct: 132 DTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLVALGVSYLML 191

Query: 184 AYVVPQFVPIFQDLGVPIPWITEVILALGEFLGAYGLLVLAGLIVSGGCWAAR-LRNPAF 242
             V+P+F  +F+  G  +PW T+ +L L  ++ AY L   A + ++   +  + LR  +F
Sbjct: 192 TMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQAYSL--WAFIAIAAAIFGLKALRKNSF 249

Query: 243 REQYDRRLLGVRG--IGPLLQRVEAARLTRTLGTLLSNGVALLQALVIARQVCTNRALQA 300
           + +     LG++   IG +L +   A+ +RTL T  + G+ +L +L    +   N   + 
Sbjct: 250 QIRLKTSRLGLKFPIIGNVLAKASIAKFSRTLATSFAAGIPILASLKTTAKTSGNVHFET 309

Query: 301 QVGSAAESVKGGGTLASAFGSQPLLPELALQMIEVGEQAGELDSMLLKVADIFDVEAKRG 360
            +         G  +  A  +    PE+ LQM+ +GE++G+LD ML KVA I++ E    
Sbjct: 310 AINEVYRDTAAGMPMYIAMRNTEAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNT 369

Query: 361 IDRLLAALVPSLTVVMAVLVAVIMLAIMLPLMSLTS 396
           +D L   L P + V +  +V  +++A+ LP+ +L S
Sbjct: 370 VDNLGKILEPLIIVFLGTVVGGLVVAMYLPIFNLMS 405