Pairwise Alignments

Query, 398 a.a., general secretion pathway protein GspF from Pseudomonas simiae WCS417

Subject, 407 a.a., type II secretion system F family protein from Vibrio cholerae E7946 ATCC 55056

 Score =  179 bits (455), Expect = 1e-49
 Identities = 115/406 (28%), Positives = 207/406 (50%), Gaps = 17/406 (4%)

Query: 1   MSLFKFRALDSQGVPQNGTLEAVDQVAAVAALHKRGLLLLQIEAAGSP---------LLR 51
           M+ F ++  ++ G   +G +EA  +  A   L  +G++   I    +           L 
Sbjct: 1   MATFYYQGRNADGSKASGLVEAATEELAAEMLLNKGIVPTSIAQGAAEKSAFDFNWKALL 60

Query: 52  NPRGQLKGAALVSFTQQLATLLGAGQPLERSLSLLLKQPGQPQVRALIGRIRDHVKAGKP 111
            P   L+   LV F +Q+ +L  AG PL RS+  L +     Q++A +  + + +  G+ 
Sbjct: 61  TPSVPLE--VLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNGRN 118

Query: 112 LSAALEEEGGSFSPLYLSMVRAGEAGGALENTLRQLSDYLERSERLRGEVINALIYPAFL 171
           LSA+++     FSPL++SM++ GE  G L+  L QL+ Y E+    R  +  A+ YP F+
Sbjct: 119 LSASMQLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFV 178

Query: 172 VVGVLGSLALLLAYVVPQFVPIFQDLGVPIPWITEVILALGEFLGAY-GLL--VLAGLIV 228
           +  VL ++ +L   V+PQF  +F   GV +P  T +++   +F   Y GLL  ++ GL+ 
Sbjct: 179 ITFVLLAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYWGLLLGIIVGLLF 238

Query: 229 SGGCWAARLRNPAFREQYDRRLLGVRGIGPLLQRVEAARLTRTLGTLLSNGVALLQALVI 288
           +   W         R ++D   L +  +G ++ R + +R  RT   +LS GV L Q+L +
Sbjct: 239 AFRAWVNTTNG---RIRWDHLRLRMPIVGDIVNRAQLSRFARTFSLMLSAGVPLNQSLAL 295

Query: 289 ARQVCTNRALQAQVGSAAESVKGGGTLASAFGSQPLLPELALQMIEVGEQAGELDSMLLK 348
           + +   N+ L+ ++      ++ G  +++   +  +   L +QM+ VGE+ G +D +LL+
Sbjct: 296 SAEAIDNKFLEQRILEMKSQIESGVAVSATAINANIFTPLVIQMMSVGEETGRIDELLLE 355

Query: 349 VADIFDVEAKRGIDRLLAALVPSLTVVMAVLVAVIMLAIMLPLMSL 394
           V+D +D E    +  L A + P L V +A +V V+ L I LP+  +
Sbjct: 356 VSDFYDREVDYDLKTLTARIEPILLVFVAAMVLVLALGIFLPMWGM 401