Pairwise Alignments

Query, 703 a.a., general secretion pathway protein GspD from Pseudomonas simiae WCS417

Subject, 674 a.a., type II secretion system protein GspD from Vibrio cholerae E7946 ATCC 55056

 Score =  140 bits (354), Expect = 2e-37
 Identities = 151/654 (23%), Positives = 277/654 (42%), Gaps = 88/654 (13%)

Query: 92  NFADQPIEAVINSVMGDLLHENYSIAQGVKGNVSFSTSKPVDKQQALSILETLLSWTDNA 151
           +F    I+  IN ++G  L +   +   V+G V   +   ++++Q  S   ++L     A
Sbjct: 30  SFKGTDIQEFIN-IVGRNLEKTIIVDPSVRGKVDVRSFDTLNEEQYYSFFLSVLEVYGFA 88

Query: 152 MIKQGDRYVILPANQAVAGKLVPQMNVAQPSSG--LSARLFALRYISATEMQKLLKPF-- 207
           +++  +  + +  ++      +P ++  + ++G  +  ++ A++ +S  E+  LL+    
Sbjct: 89  VVEMDNGVLKVIKSKDAKTSAIPVLSGEERANGDEVITQVVAVKNVSVRELSPLLRQLID 148

Query: 208 -ARENAFLLVDPARNVLSLAGTPDELANYQDTIDTFDVDWLKGMSVGVFGLQRASVAELM 266
            A     +  DPA N++ + G    +    + I    VD      + V  L  AS AE++
Sbjct: 149 NAGAGNVVHYDPA-NIILITGRAAVVNRLAEIIRR--VDQAGDKEIEVVELNNASAAEMV 205

Query: 267 PQLQSMFGPDSGMPLAGMLR--FLPIERTNSVVAISSQPQYLSEVGDWIRTIDEGGGNEP 324
             ++++            L+  F+  ERTNS++ IS  P+    +   I+ +D     + 
Sbjct: 206 RIVEALNKTTDAQNTPEFLKPKFVADERTNSIL-ISGDPKVRERLKRLIKQLDVEMAAKG 264

Query: 325 QMYVYDVRNMKAADLAKYLRQIYGTGAIKDDTPAKVAPGLRTTTLSSLNSGGLQNNPPAA 384
              V  ++  KA DL + L+ +                                     +
Sbjct: 265 NNRVVYLKYAKAEDLVEVLKGV-------------------------------------S 287

Query: 385 EESEPQEKEVAPTSALEAGTRITAQKSSNQLLVRTRPAQWKEIEAAIKRLDNPPLQVQIE 444
           E  + ++    PT++      I A   +N L++         +   I +LD    QV IE
Sbjct: 288 ENLQAEKGTGQPTTSKRNEVMIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIRRAQVLIE 347

Query: 445 TRILEVKLTGELDLGVQW------------YLGRLAGN-------SSSTTVANA------ 479
             I+E+     ++LGVQW              G   GN       +  TT   A      
Sbjct: 348 ALIVEMAEGDGINLGVQWGSLESGSVIQYGNTGASIGNVMIGLEEAKDTTQTKAVYDTNN 407

Query: 480 -------SGSQGALGGGGAGLGATDSLFYSFVSSNLQVALHALETNGRTQVLSAPSLVVM 532
                  + ++G      + L +      S    +    ++A+  +  + +LS+PS+ VM
Sbjct: 408 NFLRNETTTTKGDYTKLASALSSIQGAAVSIAMGDWTALINAVSNDSSSNILSSPSITVM 467

Query: 533 NNQPAQIQVGDNIPINQTTVNTGDADTTLSSVEYVQTGVILDVVPRINPGGLVYMDIQQQ 592
           +N  A   VG+ +P+   +    + D    +V+  + G+ L VVP+IN G  V ++I+Q+
Sbjct: 468 DNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQE 527

Query: 593 VSDAENQSTNSDTPVNPRISTRSVSTQVAVQSGQTVLLGGLIKQDNQESVSAVPYLGKIP 652
           VS+       ++  V+ R + R ++T V VQ GQ ++LGGLI +   ES S VP LG IP
Sbjct: 528 VSNV----LGANGAVDVRFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIP 583

Query: 653 GLRWLFGSTSKSKDRTELIVLITPKVITSSGQARQVTD---DYRQQMQLLRLDK 703
            L  LF STS   ++  L+V I P +I     A  +T    +Y +  QL R +K
Sbjct: 584 LLGQLFRSTSSQVEKKNLMVFIKPTIIRDGVTADGITQRKYNYIRAEQLFRAEK 637