Pairwise Alignments

Query, 703 a.a., general secretion pathway protein GspD from Pseudomonas simiae WCS417

Subject, 578 a.a., type IV pilus secretin PilQ from Vibrio cholerae E7946 ATCC 55056

 Score =  120 bits (300), Expect = 2e-31
 Identities = 85/300 (28%), Positives = 142/300 (47%), Gaps = 42/300 (14%)

Query: 406 ITAQKSSNQLLVRTRPAQWKEIEAAIKRLDNPPLQVQIETRILEVKLTGELDLGVQWYLG 465
           I+  + +N LL+R  P     I   I+ LD P  QVQIE RI+ VK     +LGV+W + 
Sbjct: 293 ISIDERTNSLLIRELPDNIAVIREIIESLDIPVKQVQIEARIVTVKEGNLEELGVRWGVM 352

Query: 466 RLAGNSS--------------------------STTVANASGSQGALGGGGAGLGATDSL 499
              G+ S                          +  +A+ S +  ++    A LG+    
Sbjct: 353 STNGSHSVGGSIESNLWQKGLLADDEFPVDEFLNVNLASTSANASSIAFQVAKLGS---- 408

Query: 500 FYSFVSSNLQVALHALETNGRTQVLSAPSLVVMNNQPAQIQVGDNIPINQTTVNTGDADT 559
                 + L + L AL+   + +++S+P L+  N QPA I+ G  IP  +++       +
Sbjct: 409 -----GTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLESS------SS 457

Query: 560 TLSSVEYVQTGVILDVVPRINPGGLVYMDIQQQVSDAENQSTNSDTPVNPRISTRSVSTQ 619
             S+V + +  + L V P+I P   + +D+     D   ++  + T     I T+ + TQ
Sbjct: 458 GASTVAFKKAVLSLKVTPQITPDNRLVLDLSV-TQDRRGETVKTGTGEAVSIDTQRIGTQ 516

Query: 620 VAVQSGQTVLLGGLIKQDNQESVSAVPYLGKIPGLRWLFGSTSKSKDRTELIVLITPKVI 679
           V V +G+TV+LGG+ +     SV  VP LG +P L  LF  T +   ++EL++ +TPKV+
Sbjct: 517 VLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 576