Pairwise Alignments

Query, 820 a.a., ABC transporter permease from Pseudomonas simiae WCS417

Subject, 836 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  345 bits (886), Expect = 5e-99
 Identities = 272/831 (32%), Positives = 407/831 (48%), Gaps = 46/831 (5%)

Query: 8   LRALLSHWRRHPVQFFSVLTGLWLATALLVGVQALNSQARDSYARASQLIGGEPQASLGT 67
           ++ALL H+RR+P+Q   V  GL L  +LLVGV A+N  AR SY    +L        + +
Sbjct: 25  VKALLGHYRRYPLQICLVWLGLTLGVSLLVGVTAINHHARQSYEHGEKLFSNPLPYRIRS 84

Query: 68  PDGAS-FAQDVFAQLRRAGWPVS-PVVQGRVQLEGQPDVRLQLMGIDPVSLPGSGAVAGQ 125
              A+   Q ++ QLRR G+    P    R       D+ LQ  GIDPV+L       G+
Sbjct: 85  KHIANKIPQGLYIQLRRDGFQQCVPFDDYRFSTTSGLDLILQ--GIDPVALLSIDN--GK 140

Query: 126 RLSQAQMLAFFDPPGRTWIAPQTLQALGLHEGQQPTTLSGHTLPPLQIQA-DMAPGL-LL 183
            L+Q   L   +PP    ++ +  +     EG       G  L P+ I   +   G+ ++
Sbjct: 141 PLAQQSGLQLMNPPYPVMVSQELAKLQDWQEGDYIALTDGSQLGPIVIDRHNQVTGMRVV 200

Query: 184 TDIGFAQPVLEMPGRLSRLLVDKAFAAG---QPTAPAGLQLKQGEDNNLARLTESFHLNL 240
            D+   + + +  G       D   A     + + P GL L +   + L  LT++FHLNL
Sbjct: 201 ADLSLVRMLKKGSGLTVIACADMPPAKLDKLKKSLPNGLTLTRSTRSELESLTQAFHLNL 260

Query: 241 DALGFLSFVVGLFIVHAAIGLALEQRRGLLRTLRACGVSVRMLIASLSVELGALSLLGGV 300
            A+G L+F+VG+FI + A+ L++ QR+ L+ TLR  GV+   L  +L +EL  L L+  V
Sbjct: 261 TAMGMLAFLVGIFIFYQAMSLSMVQRQPLVGTLRQIGVNGWQLAKALLIELLVLVLVSWV 320

Query: 301 LGVASGYLLASLLLPDVAASLRGLYGAEVPGQLNLSPWWWGAGLGLSLLGALLAG-ASSL 359
            G   G LLA+ L+P VA+SL  LY A V   +    W W +    SLL ALLA  AS  
Sbjct: 321 CGNVLGLLLANQLIPSVASSLGYLYNANVDLAIGWD-WSWSS---YSLLMALLAAFASCT 376

Query: 360 WRAARL----PLLALANAQAWHEAHGRWLRRQGWVASAALLIAVLALWLGNSLAAGFVLM 415
           W   RL    P+   A       A G+  + Q  +A A  + AV       S  +GF ++
Sbjct: 377 WPLVRLLRSQPIRLSARLSLVRFA-GKEFKLQALLACALCVAAVAIYQAPKSQQSGFAII 435

Query: 416 AALLLGAALGLPVVLNGLLKAVLGRSRSVLGQWFLADCRQQLPALSLALMALLLALAANI 475
             +LL  AL  P ++  L  +     R V  +WF AD    +    +A MA ++ALAANI
Sbjct: 436 GLMLLSVALFTPYIIWTLFTSFSYTLRWVKVRWFFADAAASMSYRGVATMAFMVALAANI 495

Query: 476 GAGSMTSGFRYTFNNWLEQRLTAELYLNPQTPAQAQQLSTWLGQQPLVQTVLPTWQVAVQ 535
           G  +M   FR T + WL QRL A++YL P   + A ++S WLGQQP V  V   W+    
Sbjct: 496 GVETMVGSFRDTTDRWLSQRLAADIYLYPSN-SVASRMSQWLGQQPEVDAVWWRWEKDFA 554

Query: 536 LQGWPADLF------GVVDDPTYRQHWPLLEAANKPWDQLQQGDTLMLSEQLARRLNVRL 589
            Q  P  +       G +D  T +   P        W  L     +M+SE +A +L +R 
Sbjct: 555 SQQGPVQIVSTGASDGELDSLTVKLGVP------NYWYHLHHARGVMISESMALKLGIRP 608

Query: 590 GDSVNIATPQGV-WAPKVVGVYADYGNPKGHMLVNSTHLLTHWPTLSPARFNLRVAPENV 648
           GD +++  P G  WA  V GVY DYGNP   ++++      +W        N+ +A    
Sbjct: 609 GDLIDLPEPMGSGWA--VFGVYYDYGNPYHQVMMSH----QNWMKAFAGTGNVALAVVLK 662

Query: 649 APLVRE-----VQRAFALDDSRIIDQQQLKGWSSQVFERTFAATAALNSLTLGVAGVALF 703
             L  E     +   F LD  RI D   +   + +VF+RTF+    L ++TL +A   +F
Sbjct: 663 EGLTGESVKKRLDTIFRLDADRIFDNTNIHSHAMRVFDRTFSIAGTLGNITLFIAVCGIF 722

Query: 704 ISLLTQSQSRLGQLAPLWALGVTRRQLMLLNLGQTWLLAVLTLILALPLGLLLAWCLDAV 763
            S L    SRL  ++ L  LGV+ ++L+L+   Q ++   ++L++ALPLGL LA  +  V
Sbjct: 723 FSTLAGETSRLRHISLLRCLGVSGKELVLIGGMQLFVFGAISLLIALPLGLTLAKLVIDV 782

Query: 764 INVQAFGWRLPLQVFPWQLAQLLGLAMLATLLASAWPLWQLYRSRPADLLR 814
           +   +FGW + LQ+ P +    +  +M+A +LA A P+ +L R  P   LR
Sbjct: 783 VIKHSFGWTMQLQMVPGEYVYTVVWSMMALILAGALPIIRLARKSPMKSLR 833