Pairwise Alignments

Query, 286 a.a., ABC transporter permease from Pseudomonas simiae WCS417

Subject, 613 a.a., inner-membrane translocator (NCBI) from Rhodospirillum rubrum S1H

 Score =  210 bits (535), Expect = 6e-59
 Identities = 123/286 (43%), Positives = 164/286 (57%), Gaps = 3/286 (1%)

Query: 2   LNLYLFQILNGLGLGMIYFLISVGLTIIFGLLNFVNFAHGAFFLLGAYICYTAVSLTG-N 60
           ++  + Q L GL      FL++ GL+IIFG+   VNFAHG  F++GAY+ YT     G  
Sbjct: 3   VDFLIVQFLGGLASASSLFLVAAGLSIIFGVTRVVNFAHGTLFMIGAYLAYTLAETLGLG 62

Query: 61  FWLALLIAPLVVAALAWVIERVLIQRIYHLPHMFQILVTLGIALIIQEASVMIWGPVGK- 119
           FW ALL+APL V  L  +IE  L++RIY  P +FQ++ T  + LI  +   MIWGP    
Sbjct: 63  FWPALLLAPLAVGGLGALIEIGLLRRIYRAPELFQLVATFALVLIASDVVPMIWGPEDLL 122

Query: 120 SVAVPELLRGVLVVGDFVYPYYRLFLIVFSGLVGLGLWLLLERTRFGALVRAGSESTETV 179
               P L   V V+G  V P Y LFLI    LV   LWL+  RTR+G LVRA +E  E V
Sbjct: 123 GPRAPGLGGAVSVMGRAV-PEYDLFLIALGPLVLGALWLVFTRTRWGLLVRAATEDREMV 181

Query: 180 SLLGTNIFRLFSMTFALGVALAGVAGVLFAPLRGAQPFVGPEILGVAFVVVVIGGMGSFS 239
           + LGT+   LF+  FALG  LAG+ G L  P       +   ++  AFVVVV+GGMGS  
Sbjct: 182 AALGTDQRWLFTGVFALGALLAGLGGALALPREAIGHGMDAGVIVQAFVVVVVGGMGSVP 241

Query: 240 GALVGGLLVGVVQSLMTTLWPQGASLMIYGAMAVVILVRPYGLFGR 285
           GA +  +L+G+V +     +PQG  + +   M  V++VRP GL GR
Sbjct: 242 GAYLAAVLLGLVNAFGVAFFPQGTLVTMGLVMGAVLIVRPRGLLGR 287



 Score = 84.3 bits (207), Expect = 6e-21
 Identities = 91/282 (32%), Positives = 133/282 (47%), Gaps = 30/282 (10%)

Query: 17  MIYFLISVGLTIIFGLLNFVNFAHGAFFLLGAYICYTAVSLTG-NFWLALLIAPLVVAAL 75
           +I  L +  L ++ G    V+F HGAFF LGAY    AV   G +  +AL  APL    L
Sbjct: 340 LILALSASALQLLMGTGGMVSFGHGAFFGLGAYGTAVAVVQGGLSLPIALACAPL-AGGL 398

Query: 76  AWVIERVLIQRIYHLPHMFQILVTLGIALIIQEASVMIWGPVGKSVAVPELLRGVLV--- 132
             ++   LI R   L  ++  ++TL  A II   ++   G  G        L GV     
Sbjct: 399 GGLLVGWLISR---LSGVYLAMLTLAFAEIIHALAIQAVGVTGGDNG----LIGVWPPPW 451

Query: 133 VGDFVYPYYRLFLIVFSGLVGLGLWLLLERTRFGALVRAGSESTETVSLLGTNIFRLFSM 192
            GD     + +  I    L GL    L E   FG  +RA  ++       G    RL ++
Sbjct: 452 AGDPAVFAWLVMAICLPALFGLRALALGE---FGRRLRALRDARSRAEASGIAAARLHAL 508

Query: 193 TFALGVALAGVAGVLFAPLRGAQPFVGPEILGV-----AFVVVVIGGMGSFSGALVGGLL 247
           TFA+  A AG+AG LFA L+G+   V P I  +     A V+V++GG+ + +G LVG  L
Sbjct: 509 TFAIVGAGAGLAGGLFAFLKGS---VFPAITAIPTSVDALVMVLLGGLHALAGPLVGAFL 565

Query: 248 VGVVQSLM---TTLWPQGASLMIYGAMAVVILVRPYGLFGRA 286
              ++S++   T LW     L++ G    ++LV P G+ G A
Sbjct: 566 YLGLESVVAARTDLWQLVVGLVVLG----LVLVFPQGVAGAA 603