Pairwise Alignments

Query, 467 a.a., RND transporter from Pseudomonas simiae WCS417

Subject, 477 a.a., outer membrane efflux protein (RefSeq) from Shewanella sp. ANA-3

 Score =  187 bits (476), Expect = 5e-52
 Identities = 135/457 (29%), Positives = 220/457 (48%), Gaps = 18/457 (3%)

Query: 5   SLYLPALCVLLSACTGNPPAVDSGIAPPAAWQFAERDAAQATNQQWWTQFGSPQLNRLID 64
           S+ L + C  L      PPA+      P  WQ  + +  Q +   WW +F  P+LN+LI 
Sbjct: 28  SIALLSGCGALMRSDFEPPALQV----PEQWQHTQVNG-QVSLDPWWQKFNQPELNQLIS 82

Query: 65  QARRDSFDVAAATARVHQAQASAVIAGAPLLPEVKLNLTTSRQKLLRGPGGPDLDASQSD 124
           Q    + D+  AT  + +A+  A +A   L P++  N T S  K L   GG    A    
Sbjct: 83  QVLSSNNDLTLATLTLQKARLQAGLARDDLYPQLSSNNTASVNKPL--DGGSSSRA---- 136

Query: 125 DTVDNFGANLTASYEVDFWGGRAAARDSALHNVRASEFDQATVELTLLSSVADRYAQTLA 184
                F ANL+ SYEVD WG  +A  D A     AS  D+ +   +L+++ A  Y Q   
Sbjct: 137 -----FQANLSVSYEVDLWGKVSANIDQAQWTALASLEDRESTAQSLVATTASLYWQIGY 191

Query: 185 AQQRQQIAELNLANARNVLDLVQTRYDAGSATALE-LAQQKSLVASQQRQLPLIQQLAEE 243
             +R +++  ++ ++R  L L Q +Y +G+ T L  L  Q+SL   +     L+QQL E 
Sbjct: 192 LHERIELSNKSIEHSRQTLALTQRQYASGAVTELNVLESQRSLAGQEASHSQLLQQLVEA 251

Query: 244 SRITLAALLGQPVQALNLGTEPFQALTWPAIGAGLPSQLLSRRPDIAKAEAQLAAAQADV 303
               LA LL +  + + +  +       P +G G+P+ L+ RRPD+  A  QL +A A  
Sbjct: 252 EN-ALAILLNRAPEQVAVEIKQLPDSAVPEVGVGIPADLVGRRPDVKAALYQLRSALASK 310

Query: 304 TVARAAMLPAITLGATLGSDAYKAVDVLRSPYYTLTAGLVAPIFNNGRLSAERDKARARQ 363
               A+  P+++L  ++G    +  ++LR+P  +L AGLV P     ++    D A    
Sbjct: 311 DATYASYFPSLSLTGSVGESTSELKELLRNPVGSLGAGLVLPFLQWNQMQINNDIADIDY 370

Query: 364 DELLQTYRGAIINGFADVEKSLSSITRLDQQREWQSEELQQAQTAFQIAESRYQAGAEDL 423
              + +YR  + + F DV+ ++S+  +   Q E    +   A  A  I ES+Y+ GA  +
Sbjct: 371 QSAIVSYRKTLYSAFEDVDNAISAKQQYAYQGEKLELQFSAAAQAEAIYESQYRHGAIGI 430

Query: 424 LTVLETQRTLYTAQDQNVQLRLSRLQASIALYKALGG 460
              ++ Q    +A+   ++ R ++L A   LY+ALGG
Sbjct: 431 QNWIDAQENRRSAEAALLENRYNQLTAQATLYQALGG 467