Pairwise Alignments

Query, 389 a.a., hemolysin secretion protein D from Pseudomonas simiae WCS417

Subject, 409 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella sp. ANA-3

 Score =  236 bits (602), Expect = 9e-67
 Identities = 147/397 (37%), Positives = 222/397 (55%), Gaps = 21/397 (5%)

Query: 5   RPARRALLVIACLIPFIAVAAWQVL--PPGRDTLTTVTVTRGSIENSVTALGTLQPRRYV 62
           + ++R L++I   +  +   A+ +L  P    +  T  V RG IENSV A G LQ  + V
Sbjct: 9   KSSKRKLILILSGLVLLGGGAYFLLHKPEAAPSYVTEPVKRGDIENSVLANGMLQASKLV 68

Query: 63  DVGAQASGQIRKIHVEAGDQVEEGQLLVEIDPSTQKAKLDASRYAIENLKAQLQEQKAQH 122
            VGAQ SGQI+ + V+ G +V++G L+ +ID   Q+  L  +  +++++ AQ + ++AQ 
Sbjct: 69  SVGAQVSGQIQSLPVDLGQEVKKGDLIAQIDSLAQQNNLQNALASLKSINAQYRAKQAQI 128

Query: 123 ELARQKYQRQQRLTAANATREEDVQTAKAELSATQARVDMFQAQILQAQASLRSDEAELG 182
             A+ +Y RQQ + A  A+   D +TA+A L+  QA ++  QAQ  QA+ ++ S   +LG
Sbjct: 129 RQAKLEYTRQQEMLADKASSRADFETAEATLTVYQAELEQLQAQKQQAEINVDSARIDLG 188

Query: 183 YTRIYAPMTGTVVAVDARVGQTLNAQQQTPLILRIAKLSPMTVWAEVSEADIGHVKPGMT 242
           YT+I APM GTVV     VGQT+NA Q TP I+ +A+L  MTV A++SEADI +V PG  
Sbjct: 189 YTKITAPMDGTVVYSAVEVGQTVNANQTTPTIVEMAQLDTMTVKAQISEADIVNVHPGQA 248

Query: 243 AYFTTLSGGNRRWTSTVRQILPIPPKPLNETQGSGSPNSTSKSGSGRVVLYTVLLDVDNS 302
            YFT L   N  +  T+R I P P      T   G  ++ S S S   + Y  L DV+N 
Sbjct: 249 VYFTILGRPNHPYRGTLRAIEPGP------TSMDGDDSNMSSSDSD-AIYYHGLFDVENP 301

Query: 303 DNALMAEMTTQVFFVASQVKDALTAP-----------VAALSGTANANQQIAQVVGKNGR 351
           D  L   MT Q+  V ++  DAL  P            A+ S   +   Q    V  N +
Sbjct: 302 DRTLRIGMTAQISIVLAKADDALLVPSQVLRAKPRDKAASASDRQSRGPQYQVPVLVNNQ 361

Query: 352 IEQRQVQVGISDRLRVQVLDGLSEGDHLLIG-PADGN 387
           ++   V VGI++++  ++L GL+EGD +++G PADG+
Sbjct: 362 VQYVDVTVGINNKINAEILSGLNEGDQVVLGMPADGS 398