Pairwise Alignments

Query, 160 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 171 a.a., DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog from Pseudomonas stutzeri RCH2

 Score = 84.3 bits (207), Expect = 9e-22
 Identities = 50/146 (34%), Positives = 81/146 (55%), Gaps = 2/146 (1%)

Query: 12  FLNAKLGNRQVAEDVVHDAYVRVLERSSDT-PIEQPRAFLYRTALNLVIDGHRRNALRQV 70
           +L  +LG  Q A D+  D +VRV+ +  D   I +PRA+L+  A  L+I+  RR  + Q 
Sbjct: 26  WLRRQLGCSQRAADLAQDTFVRVMTKDEDMGAIREPRAYLHTIAKGLLINHWRRRQIEQA 85

Query: 71  EPLDVLDAEERFASSSPHTHHDHGQRLELLERALAELPPACRDSFLLRKLEGLTHLQIAE 130
             LD L  +    + SP +     + L  ++  LA+LP   R +FL+ +L+G+T+  IA 
Sbjct: 86  Y-LDALALQPELVAPSPESQALIVETLLQIDAMLAQLPAKVRRAFLMSQLQGMTYAAIAA 144

Query: 131 RLSISRAMVEKHIVNAMKHCRVRMRE 156
            L +S  MV+K++  AM HC + + E
Sbjct: 145 ELGVSERMVKKYMAQAMLHCLLLVAE 170