Pairwise Alignments

Query, 492 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 487 a.a., transporter from Vibrio cholerae E7946 ATCC 55056

 Score =  133 bits (335), Expect = 1e-35
 Identities = 129/478 (26%), Positives = 216/478 (45%), Gaps = 46/478 (9%)

Query: 15  LGLVIGVLVMVGVLLLPLPA----DLPVAGQRMLAILAFAVVVWITEAVSYEASAIMITS 70
           L  +I +L+ + VL+LP  A     L V  QR++AI   A ++W+ E +   +++++I  
Sbjct: 22  LKYIIPLLIPMLVLMLPATAFPFEGLTVIQQRVIAIFLLAALLWVFEPIPIYSTSVVIIV 81

Query: 71  LMAFLLGTAP----SLQDPTHLIGSSPAISMALTGFSNPALALVAGALFIAAAMTHTGLD 126
           L   +L         L + T   G+    +  +  F+NP + L  G  F+A A T   LD
Sbjct: 82  LEVLMLSDKGFILFRLGEGTSEFGALLKSTEIMATFANPIIMLFLGGFFLAMAATKYRLD 141

Query: 127 RRIALVTLTRVGTSTRGILLGAIAVTILLSLVVPSATARSACVVPIMMGVVAAFGVDKRS 186
             +A V L   G + + ++LG + +T + S+ + S TA +A ++ I+  V+A FG     
Sbjct: 142 VNLARVLLKPFGNNPKYVMLGLMMITAVFSMFM-SNTATTAMMLSILTPVIAVFGPKDPG 200

Query: 187 NIAAGLMIVVAQGTSIWNVGIQTAAAQNLLTVGFMDKMLGQR-VSWIDWLIAGAPWAVIM 245
            +A  L I VA   +I  +G       N + + ++   +G   +++ +W+  G P+ VI+
Sbjct: 201 RVAFALCIPVA--ANIGGIGTPIGTPPNAIALKYL---VGDNLITFAEWMAFGIPFVVIL 255

Query: 246 SAVLLFLVIKLLPPETDSIPGGKEAVAQSLVDIGPMTGPQKRLLTVSVLL--LLAWATEG 303
            A+   L+  +   E  +I          L   G      K ++        +L W   G
Sbjct: 256 MALAWLLIEFMYRAEQKTI---------ELTIKGKFLKTPKAIIVYITFASTILLWML-G 305

Query: 304 RLHPFDTTSTTYAGLVFLLLPGVGVMTWKDVQSRIPWGTVIVFGVGISLGTALLTTQAGQ 363
            LH  ++ S     +    + G+     K+    I W  + +   GI+LG AL  T    
Sbjct: 306 SLHGMNSYSVALIPVAVFSVTGI---IGKEDLKMISWDVLWLVSGGIALGLALDKTG--- 359

Query: 364 WLGSQVVAHTGLDQVGPLGVFAILGA-FLIVIHLGFASATALTSALLPILIAV------L 416
            L   VV     DQ  P  V  ILGA  L ++   F S TA  + L+PI+ A+      L
Sbjct: 360 -LAELVVHSIPFDQYSPYVV--ILGAAILCLLMANFMSHTATANLLMPIMAALGASMTPL 416

Query: 417 QTLPGEFNRLGMTMLLGFVMSYGFILPINAPQNMVCLGTGTFTARQFAKVGILVTLIG 474
             L GE     + +++ F  S G  LPI+ P N +   T    ++Q AKVGI++ + G
Sbjct: 417 NPLGGEVT---LILVVTFAASLGMSLPISTPPNALAHATRNVQSQQMAKVGIILGIFG 471