Pairwise Alignments

Query, 455 a.a., dihydropyrimidine dehydrogenase from Pseudomonas simiae WCS417

Subject, 468 a.a., glutamate synthase, small subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  178 bits (451), Expect = 4e-49
 Identities = 144/457 (31%), Positives = 213/457 (46%), Gaps = 33/457 (7%)

Query: 10  HPHEDGATLASHFTDLAPPLNARQAQLEASRCLYCYDAPCVNACPSEIDIPSFIRNIHTE 69
           HP    A  ++ F ++  P    Q   +A RCL C +  C   CP    IP++++     
Sbjct: 18  HP---AAKRSTQFIEIYQPFAQAQVSEQADRCLDCGNPYCEWKCPLHNYIPNWLKLAQQG 74

Query: 70  NVQGAAQKILSANILGGSCARVCPTEILCQQACVRNNAEECAPVLIGLLQRYAVDN--AH 127
            +  AA  +   N L   C RVCP + LC+ AC  N   +   V IG +++Y  D   A 
Sbjct: 75  RIMEAADLVHETNTLPEICGRVCPQDRLCEGACTLN--ADFGAVTIGNVEKYITDTAIAQ 132

Query: 128 FTEHPFHRAASTGKRIAVVGAGPAGLACAHRSSLHGHDVVIFEAREKAGGLNEYGIAKYK 187
                  +     +++A+VGAGPAGL CA   + +G   V+F+   + GGL  YGI  +K
Sbjct: 133 GWRPDMSKVTPRKEKVAIVGAGPAGLGCADILARNGVKAVVFDKYPQIGGLLTYGIPAFK 192

Query: 188 LVDDFAQKELDFLLQIGGIEIRHGQRLGDNLTLSELHQQFDSVFLGLGLAASKQLGLPHE 247
           L D         +L+  GIE + G  +G ++  ++L +++D+VFLG+G   + + GL  E
Sbjct: 193 L-DKAVMATRRTVLEGMGIEFKLGVTVGKDVAFNQLLEEYDAVFLGMGTYTAMKAGLEGE 251

Query: 248 DAPGLLAATDYI----REL--RQADDLTQLPLA-NRCIVLGAGNTAIDMAVQMARLGAHD 300
           DA G+  A  Y+      L    + D+  L LA  R +VLG G+TA+D      R GA  
Sbjct: 252 DAQGVYQALPYLIGNTHHLMGSTSPDMPYLNLAGKRVVVLGGGDTAMDCVRTAVRQGASS 311

Query: 301 VNLVYRRGLADMGATHHEQDIAKANQVRLLTWAQPKEVLLDDQGHVRGMRFLRTRM---- 356
           V   YRR  A+M  +  E   A+   V  L   QP  +   D G V G+  + T+M    
Sbjct: 312 VICAYRRDEANMPGSRREVQNAREEGVNFLFNRQPVAIKTQD-GKVLGVECVETQMGKAD 370

Query: 357 ENGRLLP---TGETFELAADAIFKAIG------QGFDNEALHDPLAQQLHRVGERIFVDE 407
            +GR       G    L ADA+  A G        F +  +      Q  RV      D 
Sbjct: 371 ASGRQRAEAIVGSEQLLEADAVIIAFGFQPSPAPWFADYGIE---LDQWGRVKASKQADN 427

Query: 408 QLRTSIPGVYAGGDCVSLGQDLTVQAVQHGKLAAEAM 444
             +T+ P V+AGGD V  G DL V A+  G+ AA+ +
Sbjct: 428 PFQTTNPKVFAGGDMVR-GSDLVVTAIAEGRDAAQGI 463