Pairwise Alignments

Query, 472 a.a., RND transporter from Pseudomonas simiae WCS417

Subject, 484 a.a., multidrug resistance protein from Vibrio cholerae E7946 ATCC 55056

 Score =  209 bits (532), Expect = 2e-58
 Identities = 140/464 (30%), Positives = 221/464 (47%), Gaps = 7/464 (1%)

Query: 11  LMLLALQGCSMAPTYQVPAVDLPAGYREQTSDGPWHSAQPSDQLAPEWWTLYNDSRLNDL 70
           L    L GCS+   Y   A    A   E +S   +      D  +  WW  Y D++LN L
Sbjct: 23  LSAFVLTGCSVPDHYPDLATMWEAN--ELSSTNTFSHQAEMDWPSANWWQRYQDAQLNHL 80

Query: 71  QQQLLKANPDLAAALAHFDASQAYASQLHAGLFPQISASAQPLRQRQSDSRPLRGDTQPS 130
            ++ L+ +P L  A+A    +Q +A Q  A     +  +A     + S+    +  T P 
Sbjct: 81  IEEALQHSPSLEMAMARLKGAQGFARQAGAIRSFDLGLAASATESKVSER--YQSATPPD 138

Query: 131 VYNS-NTAGFSLSYDLDLWGKIRNQVAAGDAQAQASGDDLAVARLSLQHQLATLYVQLNG 189
            +N   T   +  YD D WGK R  V A  ++  A+  +   ARL +   +A  Y +L  
Sbjct: 139 GWNDYGTLTLNFQYDFDFWGKNRAAVVAATSELAAAEAESVAARLMISTSIANAYAELAR 198

Query: 190 LDAQARILDRSLDDFRQALQLTRSRYEGKIASELDLTRAQNQLAEAKAQWDEIRGQRNLT 249
           L A    +  +L    + ++L   RY   + +   +++A+   A  +A+   I+    L 
Sbjct: 199 LYANQETVHAALQVRNKTVELLEKRYANGLETLGSVSQAKAVAASVEAELLGIQESIQLQ 258

Query: 250 EHAIGELVGVAASDFSLSPSPQ--LISLPGIPSQLPSHLLQRRPDIAAAERRVFAANANI 307
           ++A+  LVG      +    P   L S  G+PS+    LL  R DI AA  R  AA   +
Sbjct: 259 KNALAALVGQGPDRAASIEEPHITLTSRYGLPSEAGVGLLGHRADITAARWRAEAAAQQV 318

Query: 308 GVAKAAWYPDFSLTGLIGGQTQGVGNLLSAGNRYWALGPLVNLPIFDGGRLSANERQAKA 367
           G+A+A +YPD +L+  IG Q  G+ +L  +GN   A+GP + LP+F GGRL      A+A
Sbjct: 319 GIAQAQFYPDVTLSAFIGYQAFGLDHLFDSGNDAGAIGPAIYLPLFTGGRLEGQLTSAEA 378

Query: 368 EFEEASAHYRSQVLKAVREVEDNLAQLRDLQQEAQDEQAAADAAQHTQSLAMNSYQAGAV 427
            ++EA A Y   +++A+ EV D +   + LQ      + A   A+    +A N YQ G  
Sbjct: 379 RYQEAVAQYNGTLVQALYEVADVVTSSQALQARINKTEQAVQQAEQALHIATNRYQGGLA 438

Query: 428 SYLDVVTAQTAALQAQRTLQAVQTRQLQASVGLVTALGGGWHAS 471
           +YLDV+ A+ + L  QR L  +Q+R     + L+ ALGGG+  +
Sbjct: 439 TYLDVLVAEESLLNNQRALVNLQSRAFSLDLALIHALGGGFETT 482