Pairwise Alignments

Query, 472 a.a., RND transporter from Pseudomonas simiae WCS417

Subject, 499 a.a., RND efflux system, outer membrane lipoprotein, NodT (NCBI) from Rhodospirillum rubrum S1H

 Score =  202 bits (514), Expect = 2e-56
 Identities = 147/478 (30%), Positives = 235/478 (49%), Gaps = 12/478 (2%)

Query: 1   MRPRLKPLAALMLLALQGCSMAPTYQVPAVDLPAGYREQTSDGP-WHSAQPSDQLAPE-- 57
           MR  L    A++ L L GCS  P YQ PA  +P  +     DGP +  AQ   +      
Sbjct: 13  MRSSLMSCVAVLAL-LGGCSFIPDYQRPAAPVPTAW----PDGPAYDQAQAGGETIATLG 67

Query: 58  WWTLYNDSRLNDLQQQLLKANPDLAAALAHFDASQAYASQLHAGLFPQISASAQPLRQRQ 117
           W   + D  L  L  Q L+ N DL +A    ++++A      A L P ++       QR 
Sbjct: 68  WREFFRDPALQRLIAQALEHNRDLRSAALTVESARATYRIERADLLPTVNGGTDLTHQRT 127

Query: 118 SDSRPLRGDTQPSVYNSNTAGFSLSYDLDLWGKIRNQVAAGDAQAQASGDDLAVARLSLQ 177
             +    G  Q +   S   G + SY++D +G+IR+       Q  A+ +     +++L 
Sbjct: 128 PRTATQTGKAQTTTNYSANIG-TTSYEIDFFGRIRSLEEEALEQYFATEEARRSVQIALI 186

Query: 178 HQLATLYVQLNGLDAQARILDRSLDDFRQALQLTRSRYEGKIASELDLTRAQNQLAEAKA 237
            ++A  Y+ L       ++ + +L+   ++  LT+  ++  + + LD+T+AQ  +  A+A
Sbjct: 187 AEVANAYITLLADRTLLQLTEETLNTRIESFNLTQQSFDRGVGTRLDVTQAQTTVETARA 246

Query: 238 QWDEIRGQRNLTEHAIGELVGVAASDFSLSPSPQLIS---LPGIPSQLPSHLLQRRPDIA 294
                        +A+  LVG       L+ +P L      P +P+ LPS LL RRPDI 
Sbjct: 247 NRAIYTRYVAQDINALRLLVGDQLDANLLAGTPPLDLGRFFPNVPAGLPSDLLLRRPDIL 306

Query: 295 AAERRVFAANANIGVAKAAWYPDFSLTGLIGGQTQGVGNLLSAGNRYWALGPLVNLPIFD 354
            AE ++ AANANIG A+AA++P  SLTG +G  +  +G+L S+G+  W++GP +++P+FD
Sbjct: 307 EAEHKLVAANANIGAARAAFWPKISLTGNLGTASASLGDLFSSGSLAWSVGPSLSVPLFD 366

Query: 355 GGRLSANERQAKAEFEEASAHYRSQVLKAVREVEDNLAQLRDLQQEAQDEQAAADAAQHT 414
             R  A    AK + E A A Y   +  A REV D LA    L  + + +Q    A Q +
Sbjct: 367 FWRNEATLESAKVQREIAVAAYEKSIQTAFREVADALAAKGTLGDQLRAQQDLVAATQES 426

Query: 415 QSLAMNSYQAGAVSYLDVVTAQTAALQAQRTLQAVQTRQLQASVGLVTALGGGWHASN 472
            +L+ N Y  G  +YL  + +Q +   AQ+ L +V+  QL   + L   LGGG  A++
Sbjct: 427 YALSRNRYDQGIDNYLSTLDSQRSLYAAQQDLISVRANQLTNYITLYKVLGGGSFATS 484