Pairwise Alignments

Query, 389 a.a., RND transporter MFP subunit from Pseudomonas simiae WCS417

Subject, 368 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score =  103 bits (257), Expect = 8e-27
 Identities = 94/367 (25%), Positives = 157/367 (42%), Gaps = 25/367 (6%)

Query: 20  LTLAALLVANGLHARTLHEQSVTAWTETAAIPQVRVFQPQQNAAG--DTLRLPAHLEAWS 77
           L +A LL  + +      +Q +  +      P+  V     N       +     +E   
Sbjct: 9   LLIAILLFGSVIGFNLFKQQKIAEYLANRPEPEFPVTVVTANPVDWVPVIEAIGFIEPNQ 68

Query: 78  KAPIHARVSGYLKDWKADIGTQVKAGQILAEIDSPDLDQQMAQTHARLIQEQANARLAQT 137
              +    +G +     + GTQV   Q L  +DS       A   A L   +A    A+ 
Sbjct: 69  GVTLTTETAGVIDQITFESGTQVAKDQPLVLLDS-------AVERANLKSTEARLPAAKA 121

Query: 138 TATRWQNLLASHSVSRQEADEKTSNAAAAKANAEAAAADYARLSALESYKTIRAPFAGTI 197
              R++ L A  S+S++  DE       A+A+  A +AD   L A  + + I+APFAG I
Sbjct: 122 KYERYKGLFAKGSISKESYDE-------AEASYYALSADIESLKATIARREIKAPFAGVI 174

Query: 198 TARNTDIGQLIKADTDSDPELFNIADTHQLRLYVPVPQNYAAVIHPGLEAELTVPEHPGE 257
             RN  +GQ ++  TD    +  + DT  +RL   VPQ   + I    E ++ V  +P  
Sbjct: 175 GIRNVFLGQYLQPGTD----IVRLEDTSVMRLRFTVPQRDISRISLDQEVDIFVDAYPQT 230

Query: 258 HFKARLIGDSTAIDRRSGTLLAQFVADNPNGELLPGDYAEATLPIPADTHGVSIPASALI 317
            FK  +     A+  +SG +  Q    N +G+L  G +A A + +P   + V++P +A+ 
Sbjct: 231 SFKGSISAIEPAVSVQSGLIQVQADIPNSDGKLRSGMFARANIILPKLENQVTLPQTAIT 290

Query: 318 FRAQGTQVAVLDAHNHVHLQTIHIGLDLGER----LVIDQGLKPVDRVVDNPPDALREGD 373
           +   G  V ++   N       H+ + +GER      I +G+KP D VV      L  G 
Sbjct: 291 YTLYGDNVYIVSEENGEKRVQQHV-VKVGERSESIAHILEGVKPGDVVVTTGQVRLSNGA 349

Query: 374 PVQLADA 380
            V++ ++
Sbjct: 350 KVRIVES 356