Pairwise Alignments

Query, 168 a.a., RNA polymerase subunit sigma-24 from Pseudomonas simiae WCS417

Subject, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

 Score = 48.5 bits (114), Expect = 6e-11
 Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 13/140 (9%)

Query: 25  NASSADDLVQSTLERAIISWADKRVEGDLRAWLFSILYR----QFLDAHRRTRRY---AR 77
           N+    D+ Q    +A  +    R E     WL+ I         +   RR       A 
Sbjct: 43  NSGDVADVAQEAFIKAYRAIPTFRGESAFYTWLYRIAVNTAKNHIVAQSRRPPASDVDAE 102

Query: 78  MLEFFTGRDDAQP--SVERTVIAQ----STLQAFDQLNTEQRALLLWVSVEGLSYKEIAE 131
             EF+ G D  +   + E   +++    +   A D L  + +  +    ++GLSY+EIAE
Sbjct: 103 EAEFYEGGDALKELSNPENITLSKELKKTVFDAIDALPDDLKTAMTLRELDGLSYEEIAE 162

Query: 132 ILEVPIGTVMSRLSRARQAL 151
           +++ P+GTV SR+ RAR+A+
Sbjct: 163 VMDCPVGTVRSRIFRAREAV 182