Pairwise Alignments

Query, 168 a.a., RNA polymerase subunit sigma-24 from Pseudomonas simiae WCS417

Subject, 194 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

 Score = 53.1 bits (126), Expect = 3e-12
 Identities = 41/158 (25%), Positives = 78/158 (49%), Gaps = 15/158 (9%)

Query: 13  PRLRRFAVSLTRNASSADDLVQSTLERAIISWADKRV----EGDLRAWLFSILYRQFLDA 68
           P+L++F +    +   A +LVQ T+      W    +    +  L  W+++I      D 
Sbjct: 38  PKLKQFVMKHVGSEQVALELVQETMSTV---WQKASLFDGQKSSLATWIYTIARNLSYDL 94

Query: 69  HRRTR-RYARMLEFFTGRDDAQP-------SVERTVIAQSTLQAFDQLNTEQRALLLWVS 120
            RR + R A +L      +D  P       + E+ ++ +  ++  D+L   Q+ ++  V 
Sbjct: 95  LRRQKGRDAYVLADDIWPEDYCPPDLVDHYAPEQDLLKEQVMKFLDRLPEAQQQVIKAVY 154

Query: 121 VEGLSYKEIAEILEVPIGTVMSRLSRARQALRLLSDGE 158
           +E +  +++A++L++P+GTV SRL  A + LRL  D E
Sbjct: 155 LEEIPQQDVADMLDIPLGTVKSRLRLAVEKLRLSMDAE 192