Pairwise Alignments

Query, 311 a.a., LysR family transcriptional regulator from Pseudomonas simiae WCS417

Subject, 302 a.a., putative transcriptional regulator (RefSeq) from Shewanella amazonensis SB2B

 Score =  179 bits (454), Expect = 7e-50
 Identities = 107/301 (35%), Positives = 163/301 (54%), Gaps = 8/301 (2%)

Query: 1   MNLSKVDLNLFIVFDAIYTEANLTRAGQIVGITQPAVSNALARLRETFNDPLFVRTAQGM 60
           M L ++DLNL + FDA+ T+ ++TRA + + I+QPA+S+AL RLR  F D L VRT QGM
Sbjct: 1   MKLHQLDLNLLLAFDALMTQGSVTRAAESLFISQPAMSHALGRLRTAFGDQLLVRTPQGM 60

Query: 61  VPTPMAQNIIGPVRNALSLLRVSVQESRIFNPQQAAKTYRISMTDLTEAVILPLLFQRLR 120
           VPTP AQ++   VR AL LL   + E   F P+ + + + +  TD  E V++P L QRL 
Sbjct: 61  VPTPRAQHLHSGVRQALRLLEQQLSEEEAFEPENSRRRFVLCTTDYVECVLMPPLVQRLN 120

Query: 121 RLAPTVVIESFLSKRRETTKELAAGRLDFAV--DAPLNTDPQVRHVKLMEDRYVCAMRKG 178
            LAP V IE  + + R    ELA+G +D  +  D  +     +     + +     +RK 
Sbjct: 121 ELAPGVSIEIRILRDRLPEAELASGEIDLVLGFDEYMQVPAYLGKETWLTEPLAGLVRKD 180

Query: 179 HPLAGKDKLTLDDYLGLTHIHISSRRNGLGHVDLALGKMGLQRKIALRSQHYLMASQVLQ 238
            P  G +++ L + +G+ H+  S        +D  L   GL R+I++ SQ Y+ A+ ++ 
Sbjct: 181 LPGVG-ERMALSELIGMAHVFHSPLGTSEARLDNWLESQGLSRRISVNSQSYMSAAAIVC 239

Query: 239 QTDMVMTVPERFARRHELHW----FNLPVNDVPPVETHLYWHESTDQDPANRWMREQMIE 294
           ++D V+ +P++ A     HW      LP  DVP    +  WH +    PA  W+R  M E
Sbjct: 240 RSDYVLVLPKKVADLLAEHWPLKRLQLP-EDVPGYHLNCVWHPALGGHPALIWLRSLMKE 298

Query: 295 L 295
           L
Sbjct: 299 L 299